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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G050110.1
HORVU1Hr1G065250.2
HORVU1Hr1G070420.1
HORVU2Hr1G060350.5
HORVU3Hr1G030210.5
HORVU3Hr1G039010.1
HORVU3Hr1G040680.1
HORVU3Hr1G058300.1
HORVU3Hr1G088100.1
HORVU3Hr1G107030.1
HORVU4Hr1G055220.1
HORVU4Hr1G060100.1
HORVU4Hr1G060110.1
HORVU5Hr1G116650.1
HORVU6Hr1G034070.2
HORVU7Hr1G088140.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G07430.1 HORVU2Hr1G060350.5 AT1G30270.1 17898163
AT1G07430.1 HORVU3Hr1G058300.1 AT2G26650.1 17898163
AT1G07430.1 HORVU5Hr1G116650.1 AT3G06610.1 21798944
AT3G11410.1 HORVU3Hr1G030210.5 AT1G73000.1 19407142
AT3G11410.1 HORVU3Hr1G040680.1 AT1G73000.1 19407142
AT3G11410.1 HORVU3Hr1G107030.1 AT1G73000.1 19407142
AT3G11410.1 HORVU4Hr1G060100.1 AT1G73000.1 19407142
AT3G11410.1 HORVU4Hr1G060110.1 AT1G73000.1 19407142
AT3G11410.1 HORVU7Hr1G088140.2 AT1G73000.1 19407142
AT3G11410.1 HORVU3Hr1G030210.5 AT2G26040.1 19407142
AT3G11410.1 HORVU3Hr1G040680.1 AT2G26040.1 19407142
AT3G11410.1 HORVU3Hr1G107030.1 AT2G26040.1 19407142
AT3G11410.1 HORVU4Hr1G060100.1 AT2G26040.1 19407142
AT3G11410.1 HORVU4Hr1G060110.1 AT2G26040.1 19407142
AT3G11410.1 HORVU7Hr1G088140.2 AT2G26040.1 19407142
AT3G11410.1 HORVU6Hr1G034070.2 AT2G33610.1 19033529
AT3G11410.1 HORVU1Hr1G070420.1 AT2G38310.1 19407142
AT3G11410.1 HORVU3Hr1G039010.1 AT2G38310.1 19407142
AT3G11410.1 HORVU3Hr1G088100.1 AT2G38310.1 19407142
AT3G11410.1 HORVU4Hr1G055220.1 AT2G38310.1 19407142
AT3G11410.1 HORVU1Hr1G050110.1 AT4G17870.1 19407142
AT3G11410.1 HORVU1Hr1G065250.2 AT4G22200.1 11181729
AT3G11410.1 HORVU1Hr1G065250.2 AT4G22200.1 12034902
AT3G11410.1 HORVU1Hr1G050110.1 AT5G46790.1 19407142
AT5G59220.1 HORVU1Hr1G070420.1 AT2G38310.1 19407142
AT5G59220.1 HORVU3Hr1G039010.1 AT2G38310.1 19407142
AT5G59220.1 HORVU3Hr1G088100.1 AT2G38310.1 19407142
AT5G59220.1 HORVU4Hr1G055220.1 AT2G38310.1 19407142
AT5G59220.1 HORVU1Hr1G050110.1 AT4G17870.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G094300.1 Wheat nucleus 92.75 90.71
TraesCS4B01G210100.1 Wheat nucleus 91.5 90.15
TraesCS4D01G210900.1 Wheat nucleus 92.25 90.0
Os03t0268600-01 Rice nucleus 78.0 77.23
Zm00001d028574_P001 Maize nucleus 75.25 76.01
EER92493 Sorghum nucleus 74.5 74.31
GSMUA_AchrUn_... Banana cytosol 44.25 62.54
CDY18067 Canola cytosol 8.75 59.32
GSMUA_Achr6P15180_001 Banana cytosol 54.5 58.92
HORVU3Hr1G085930.3 Barley nucleus, plastid 53.0 53.94
CDY67257 Canola nucleus 50.0 53.91
CDY67227 Canola cytosol 49.75 53.64
VIT_06s0004g05460.t01 Wine grape nucleus 51.75 52.67
Bra002038.1-P Field mustard nucleus 50.0 52.63
KRH31027 Soybean cytosol 52.0 51.87
AT3G11410.1 Thale cress cytosol 51.5 51.63
VIT_13s0019g02200.t01 Wine grape plastid 51.5 51.5
KRG97855 Soybean cytosol 51.5 51.5
KRH15068 Soybean cytosol 50.5 50.5
CDY01017 Canola nucleus 49.5 50.38
Solyc05g052980.2.1 Tomato nucleus 51.5 50.37
CDY08530 Canola nucleus 49.25 50.13
Bra034845.1-P Field mustard nucleus 50.0 50.13
KRH73525 Soybean cytosol, mitochondrion, peroxisome, plastid 13.25 50.0
AT2G29380.1 Thale cress nucleus 45.25 50.0
Bra002594.1-P Field mustard plastid 51.5 50.0
KRH73067 Soybean cytosol 50.75 49.88
Solyc03g096670.2.1 Tomato nucleus 50.25 49.51
AT5G59220.1 Thale cress nucleus 51.0 49.39
HORVU3Hr1G067360.1 Barley cytosol, peroxisome 6.25 49.02
CDY40181 Canola cytosol 44.75 48.91
Bra018398.1-P Field mustard cytosol 44.75 48.91
PGSC0003DMT400069947 Potato cytosol 51.0 48.8
CDY45436 Canola cytosol 44.5 48.63
CDY33008 Canola nucleus, plastid 48.0 48.61
PGSC0003DMT400043146 Potato nucleus 49.75 48.54
CDX80307 Canola nucleus, plastid 48.0 48.48
CDY06705 Canola nucleus 46.75 47.95
PGSC0003DMT400077989 Potato cytosol 48.5 47.32
Solyc06g076400.2.1 Tomato nucleus 47.75 46.59
CDY10275 Canola nucleus 49.0 45.58
AT1G07430.1 Thale cress nucleus 50.25 45.48
Bra015579.1-P Field mustard nucleus 48.0 45.07
CDY06259 Canola nucleus 49.0 44.95
Bra031574.1-P Field mustard nucleus 49.0 44.95
HORVU3Hr1G059170.2 Barley cytosol, nucleus 43.25 43.36
HORVU1Hr1G090360.2 Barley cytosol, mitochondrion, nucleus 42.25 42.78
HORVU7Hr1G008370.1 Barley cytosol, peroxisome 10.75 40.95
HORVU7Hr1G029040.1 Barley cytosol, peroxisome 29.75 40.61
Bra030455.1-P Field mustard cytosol 15.5 38.99
HORVU3Hr1G067380.4 Barley cytosol 32.0 37.98
HORVU7Hr1G008520.2 Barley cytosol 15.75 37.95
HORVU2Hr1G000090.2 Barley cytosol 40.0 35.24
HORVU7Hr1G008470.2 Barley cytosol 32.5 34.95
HORVU1Hr1G080290.6 Barley cytosol 32.5 33.85
CDY36606 Canola nucleus 21.0 33.6
HORVU1Hr1G094840.9 Barley extracellular, mitochondrion 35.0 33.49
HORVU7Hr1G008560.2 Barley mitochondrion 19.25 31.69
HORVU3Hr1G050340.1 Barley plasma membrane, vacuole 34.75 29.14
HORVU7Hr1G008550.1 Barley cytosol 15.0 26.55
HORVU7Hr1G093200.5 Barley endoplasmic reticulum, plastid 21.25 7.71
PGSC0003DMT400049695 Potato extracellular 2.0 7.27
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:18.4.24.2.1ncoils:CoilGO:GO:0003674GO:GO:0003824
GO:GO:0004721GO:GO:0004722GO:GO:0005488GO:GO:0006464GO:GO:0006470GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0019538GO:GO:0043169GO:GO:0046872
EnsemblPlantsGene:HORVU4Hr1G060370EnsemblPlants:HORVU4Hr1G060370.1InterPro:IPR001932InterPro:IPR036457UniProt:M0X0K6PFAM:PF00481
InterPro:PP2CInterPro:PP2C_BSInterPro:PPM-type_dom_sfInterPro:PPM-type_phosphatase_domScanProsite:PS01032PFscan:PS51746
PANTHER:PTHR13832PANTHER:PTHR13832:SF518SMART:SM00332SUPFAM:SSF81606UniParc:UPI000294C138SEG:seg
Description
No Description!
Coordinates
chrchr4H:-:507379979..507384518
Molecular Weight (calculated)
43068.4 Da
IEP (calculated)
6.152
GRAVY (calculated)
-0.486
Length
400 amino acids
Sequence
(BLAST)
001: MSEICCHVPA GAGAEGKGAD CQDGSRAARR RRMEIRRHRL VAERGAEETS RKRRKLEEEP SSTDEEEIEP AKYGVTSVCG RRRDMEDSVS LRPEFLPGHH
101: FFGVFDGHGC SHVATSCGER MHEIVADEAR SSGSDDAERW TGVMERSFAR MDAEAVGSRS RASGAEAAPN CRCELQLPKC DHVGSTAVVA VVGPRHLIVA
201: NCGDSRAVIC RGGAAIPLSS DHKPDRPDEL ERIQAAGGRV IFWDGARVFG VLAMSRAIGD SYLKPFVIPD PEVRVLERKD GEDEFLILAS DGLWDVVSNE
301: VACHVVRSCV RSKAKRRGGR SSPTSNLSPR QSSGSGSSSG DEAQNESGGC AAGAGSESDD EEVDEACAEA AILLTKLAIA RQSPDNVSVV VVNLRRRPRF
Best Arabidopsis Sequence Match ( AT1G07430.1 )
(BLAST)
001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA
Arabidopsis Description
AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.