Factsheet for PGSC0003DMT400002746

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 2
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002746
PGSC0003DMT400019062
PGSC0003DMT400020443
PGSC0003DMT400024866
PGSC0003DMT400024968
PGSC0003DMT400029044
PGSC0003DMT400037608
PGSC0003DMT400049695
PGSC0003DMT400054318
PGSC0003DMT400054339
PGSC0003DMT400061090
PGSC0003DMT400062100
PGSC0003DMT400065964
PGSC0003DMT400080484

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26650.1	PGSC0003DMT400049695	AT1G07430.1	17898163
AT2G26650.1	PGSC0003DMT400080484	AT1G30270.1	16814720
AT2G26650.1	PGSC0003DMT400080484	AT1G30270.1	17898163
AT2G26650.1	PGSC0003DMT400019062	AT2G25090.1	17898163
AT2G26650.1	PGSC0003DMT400002746	AT2G26650.1	12678562
AT2G26650.1	PGSC0003DMT400002746	AT2G26650.1	15299147
AT2G26650.1	PGSC0003DMT400002746	AT2G26650.1	9218788
AT2G26650.1	PGSC0003DMT400061090	AT4G22200.1	12678562
AT2G26650.1	PGSC0003DMT400062100	AT4G22200.1	12678562
AT2G26650.1	PGSC0003DMT400061090	AT4G22200.1	15299147
AT2G26650.1	PGSC0003DMT400062100	AT4G22200.1	15299147
AT2G26650.1	PGSC0003DMT400020443	AT4G30960.1	17898163
AT2G26650.1	PGSC0003DMT400029044	AT4G30960.1	17898163
AT2G26650.1	PGSC0003DMT400037608	AT4G32650.1	12678562
AT2G26650.1	PGSC0003DMT400065964	AT4G32650.1	12678562
AT2G26650.1	PGSC0003DMT400037608	AT4G32650.1	15299147
AT2G26650.1	PGSC0003DMT400065964	AT4G32650.1	15299147
AT2G26650.1	PGSC0003DMT400024866	AT5G46240.1	15299147
AT2G26650.1	PGSC0003DMT400024968	AT5G46240.1	15299147
AT2G26650.1	PGSC0003DMT400054318	AT5G46240.1	15299147
AT2G26650.1	PGSC0003DMT400054339	AT5G46240.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006850.1.1	Tomato	plasma membrane	97.48	96.49
VIT_11s0016g04750.t01	Wine grape	plasma membrane	76.66	76.83
AT2G26650.1	Thale cress	plasma membrane	69.91	71.3
KRH03745	Soybean	plasma membrane	71.17	71.09
Bra032037.1-P	Field mustard	cytosol	69.57	70.7
CDY35373	Canola	cytosol, plasma membrane, vacuole	69.57	70.7
CDY55714	Canola	cytosol, plasma membrane, vacuole	69.57	70.62
KRH56647	Soybean	plasma membrane	71.97	70.44
GSMUA_Achr3P20680_001	Banana	cytosol, nucleus, plasma membrane	63.84	69.49
Solyc05g017930.1.1	Tomato	nucleus, plasma membrane	11.33	69.23
GSMUA_AchrUn_...	Banana	plasma membrane	61.44	67.89
GSMUA_Achr5P09840_001	Banana	plasma membrane	62.93	67.07
GSMUA_Achr4P09000_001	Banana	plasma membrane	41.53	64.94
GSMUA_Achr4P08990_001	Banana	cytosol, mitochondrion, plasma membrane	59.15	63.36
Zm00001d044056_P003	Maize	plasma membrane, plastid	64.07	63.13
EES03354	Sorghum	plastid	63.73	62.94
TraesCS3D01G219600.1	Wheat	plasma membrane	64.19	62.54
TraesCS3A01G233800.1	Wheat	plasma membrane	63.96	62.32
TraesCS3B01G265500.1	Wheat	plasma membrane	63.84	62.21
HORVU3Hr1G058300.1	Barley	plasma membrane	63.84	62.14
Zm00001d011473_P003	Maize	plastid	64.07	61.34
Os01t0648000-01	Rice	plasma membrane	63.04	58.93
PGSC0003DMT400074787	Potato	cytosol, nucleus, plasma membrane	58.01	58.88
PGSC0003DMT400091020	Potato	peroxisome, plasma membrane	40.39	57.77
PGSC0003DMT400054339	Potato	plasma membrane	38.33	48.69
PGSC0003DMT400024968	Potato	cytosol, plasma membrane, vacuole	38.22	48.48
PGSC0003DMT400065964	Potato	cytosol, plastid	33.75	46.75
PGSC0003DMT400037608	Potato	plastid	32.15	45.1
PGSC0003DMT400054318	Potato	nucleus	15.22	42.22
PGSC0003DMT400061090	Potato	cytosol	38.9	41.26
PGSC0003DMT400062100	Potato	plasma membrane	39.13	40.62
PGSC0003DMT400024866	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.56	34.95
PGSC0003DMT400034446	Potato	cytosol	28.6	30.19

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005242
GO:GO:0005244	GO:GO:0005249	GO:GO:0005267	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009653	GO:GO:0009987	GO:GO:0010107
GO:GO:0016020	GO:GO:0016021	GO:GO:0016049	GO:GO:0030154	GO:GO:0034765	GO:GO:0040007
GO:GO:0042802	GO:GO:0048767	GO:GO:0055085	GO:GO:0071805	GO:GO:0090333	InterPro:IPR000595
InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom
InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	UniProt:M0ZKK2	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834
PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400001066	PGSC:PGSC0003DMG400001066	EnsemblPlants:PGSC0003DMT400002746	PRINTS:PR01463	PFscan:PS50042
PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF504	InterPro:RmlC-like_jellyroll
SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix
UniParc:UPI00029518A1	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:

Description

Potassium channel [Source:PGSC_GENE;Acc:PGSC0003DMG400001066]

Coordinates

chr12:+:4997462..5004363

Molecular Weight (calculated)

98510.0 Da

IEP (calculated)

7.421

GRAVY (calculated)

-0.088

Length

874 amino acids

Sequence
(BLAST)

001: MGDNRGLGVL GVSMCGAAQE IEQLSRESSH YSLSTGILPS LGARSNRRVK LKRFIISPYD RQYRLWETFL IVLVVYTAWV SPFEFGFLGK PEGPLAKTDN
101: VVNGFFAIDI ILTFFVAFLD RATYLLVDEH KKIAWKYMST WFLFDVISTI PSELAVKISP KPLRQYGLFN MLRLWRLRRV SSLFARLEKD RNFNYFWVRC
201: AKLVCVTLFA VHCAGCFYYL IAAHYPDPKK TWIGASMDDF LNQSLWIRYI TSIYWSITTL TTVGYGDLHP ENTREMIFDI FYMLFNLGLT AYLIGNMTNL
301: VVHGTSRTRK FRDTIQAASS FAQRNQLPAR LQDQMLAHLC LKFRTDSEGL QQQETLESLP KAIRSSVSHF LFYSLVDKVY LFRGVSNDLL FQLVSEMKAE
401: YFPPKEDVIL QNEAPTDFYI LVTGAVVVGE VRAGDLCGEI GVLCYRPQLF TVRTKRLCQL LRMNRTTFLN IVQANVGDGT IIMSNLLQHL KEMKNPIMEG
501: VLLETEHMLA RGRMDLPLTL CFATLRSDDL LLHHLLKRGL DPNEADNNGR SALHIAASKG IENCVVLLLD FGADPNSRDS EGNVPLWEAI MGKHESVIQL
601: LVNNGAKLSA GDVGHFACVA VEQNNLSLLK EIVRYGGDVT LPKINGSSAL HVAVCEGNIE IVKYLLDRGA NVDQPDEHNW TPRDLAEQQG HEDIKELFES
701: RVMMRTRSVD PIPEERGVRF LGRFKSEPTI TPASHGVSFL GLDGSLGRSR PRRRSNNFHN SLFGIMSAKQ TNEHDVLLSA NDSNVSVMTT KTYAPRVTVC
801: CPEKGDNGGK LILLPQSFKE LLQIGSSRYG ISQAKVVSKD GAEIDEIELI RDGDRLVFVS DKDNNIDEAK SSEL

Best Arabidopsis Sequence Match ( AT2G26650.1 )
(BLAST)

001: MRGGALLCGQ VQDEIEQLSR ESSHFSLSTG ILPSLGARSN RRVKLRRFVV SPYDHKYRIW EAFLVVLVVY TAWVSPFEFG FLRKPRPPLS ITDNIVNAFF
101: AIDIIMTFFV GYLDKSTYLI VDDRKQIAFK YLRSWFLLDL VSTIPSEAAM RISSQSYGLF NMLRLWRLRR VGALFARLEK DRNFNYFWVR CAKLVCVTLF
201: AVHCAACFYY LIAARNSNPA KTWIGANVAN FLEESLWMRY VTSMYWSITT LTTVGYGDLH PVNTKEMIFD IFYMLFNLGL TAYLIGNMTN LVVHGTSRTR
301: NFRDTIQAAS NFAHRNHLPP RLQDQMLAHL CLKYRTDSEG LQQQETLDAL PKAIRSSISH FLFYSLMDKV YLFRGVSNDL LFQLVSEMKA EYFPPKEDVI
401: LQNEAPTDFY ILVNGTADLV DVDTGTESIV REVKAGDIIG EIGVLCYRPQ LFTVRTKRLC QLLRMNRTTF LNIIQANVGD GTIIMNNLLQ HLKEMNDPVM
501: TNVLLEIENM LARGKMDLPL NLCFAAIRED DLLLHQLLKR GLDPNESDNN GRTPLHIAAS KGTLNCVLLL LEYHADPNCR DAEGSVPLWE AMVEGHEKVV
601: KVLLEHGSTI DAGDVGHFAC TAAEQGNLKL LKEIVLHGGD VTRPRATGTS ALHTAVCEEN IEMVKYLLEQ GADVNKQDMH GWTPRDLAEQ QGHEDIKALF
701: REKLHERRVH IETSSSVPIL KTGIRFLGRF TSEPNIRPAS REVSFRIRET RARRKTNNFD NSLFGILANQ SVPKNGLATV DEGRTGNPVR VTISCAEKDD
801: IAGKLVLLPG SFKELLELGS NKFGIVATKV MNKDNNAEID DVDVIRDGDH LIFATDS

Arabidopsis Description

AKT1Potassium channel AKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q38998]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.