Factsheet for PGSC0003DMT400091020

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plasma membrane

Predictor Summary:

plastid 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005220.1.1	Tomato	cytosol	33.55	71.68
PGSC0003DMT400074787	Potato	cytosol, nucleus, plasma membrane	80.36	57.03
GSMUA_Achr4P09000_001	Banana	plasma membrane	48.77	53.31
GSMUA_AchrUn_...	Banana	plasma membrane	55.81	43.11
GSMUA_Achr3P20680_001	Banana	cytosol, nucleus, plasma membrane	55.81	42.47
VIT_04s0008g04990.t01	Wine grape	mitochondrion	62.03	42.2
GSMUA_Achr5P09840_001	Banana	plasma membrane	55.97	41.71
PGSC0003DMT400065964	Potato	cytosol, plastid	42.23	40.89
GSMUA_Achr4P08990_001	Banana	cytosol, mitochondrion, plasma membrane	54.17	40.56
PGSC0003DMT400054339	Potato	plasma membrane	45.5	40.41
PGSC0003DMT400002746	Potato	plasma membrane	57.77	40.39
CDX68851	Canola	plasma membrane	55.81	39.79
Bra007785.1-P	Field mustard	cytosol	56.3	39.72
PGSC0003DMT400037608	Potato	plastid	40.26	39.49
CDX76746	Canola	cytosol	56.79	39.48
CDY11516	Canola	cytosol	56.46	39.34
AT2G25600.1	Thale cress	cytosol	57.12	39.3
KRH61812	Soybean	plasma membrane	56.46	39.29
Zm00001d044056_P003	Maize	plasma membrane, plastid	56.96	39.23
EES03354	Sorghum	plastid	56.79	39.21
PGSC0003DMT400024968	Potato	cytosol, plasma membrane, vacuole	44.03	39.04
KRH05105	Soybean	cytosol, plasma membrane, vacuole	55.16	38.91
AT4G32500.1	Thale cress	plasma membrane	55.97	38.86
KRH52490	Soybean	plasma membrane	55.81	38.79
KRH16013	Soybean	plasma membrane	55.32	38.63
CDX75249	Canola	plasma membrane	55.32	38.58
Bra011351.1-P	Field mustard	cytosol	55.32	38.58
HORVU3Hr1G058300.1	Barley	plasma membrane	56.46	38.42
TraesCS3B01G265500.1	Wheat	plasma membrane	56.3	38.35
TraesCS3A01G233800.1	Wheat	plasma membrane	56.14	38.24
TraesCS3D01G219600.1	Wheat	plasma membrane	55.97	38.13
Zm00001d011473_P003	Maize	plastid	55.81	37.35
Os01t0648000-01	Rice	plasma membrane	55.32	36.15
PGSC0003DMT400054318	Potato	nucleus	16.37	31.75
PGSC0003DMT400062100	Potato	plasma membrane	40.26	29.22
PGSC0003DMT400061090	Potato	cytosol	39.28	29.13
PGSC0003DMT400024866	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.28	25.95
PGSC0003DMT400034446	Potato	cytosol	29.62	21.86

Protein Annotations

Gene3D:1.10.287.70	Gene3D:2.60.120.10	MapMan:24.3.2.2	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216
GO:GO:0005249	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	GO:GO:0071805
InterPro:IPR000595	InterPro:IPR014710	InterPro:IPR021789	InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG
UniProt:M1DLQ5	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	EnsemblPlantsGene:PGSC0003DMG400040591	PGSC:PGSC0003DMG400040591
EnsemblPlants:PGSC0003DMT400091020	PRINTS:PR01463	PFscan:PS50042	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF477
InterPro:RmlC-like_jellyroll	SMART:SM00100	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI0002963C28
InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:	:

Description

Potassium channel NKT1 [Source:PGSC_GENE;Acc:PGSC0003DMG400040591]

Coordinates

chr9:+:8918340..8920175

Molecular Weight (calculated)

69475.4 Da

IEP (calculated)

6.919

GRAVY (calculated)

0.063

Length

611 amino acids

Sequence
(BLAST)

001: RVYSMEDISS HYCINSGILP SLGGHSDSKI RLRNYIISPT NPRYKVWDAF LVLLVFYTAW ASPFQIGFLE TPQGLIAILD NIVNFFFAID IILSLFFVAY
101: LDKSTYTMID DPKRIALRYI KYGFIFDFIS TIPYEALPRI LQSYGFLSML RLWRLRRVSA MFVELEKNNK LSYFGIRVLK LVCVTLFAVH SAGCFYYFLA
201: ARIKDVSKTW LSLGNLHDRS IWDLYVMSMY WSITTLTTTG YGDLHAVTTE EMIFTMVYML FDLGLTAYLI GNMTNLVVHG TNKTQKFRDA IQAASSFAQR
301: NNLPVRLEEQ MLDHLSMMHR TDTEGLQQQE TLETLPRAIR SAISHHLFYS LVDKAYLFQG ISNDLLFQLI SEMKAEYFPP KEDVILQNEA STELYILVTG
401: AVDLISHKNG MDHVVGELKA GDVCGEVGIL CCRPQLFTVR TKRISQLLRL DRTSFFNTVK ANKGDRTIIM NNLLQHLKEQ TDPMMTAVLA DIEHIFTPEE
501: TTSVASENGS SNARLRRRAN FFRNSLIGPE YSSAKIGNSR IPGRITIGCL QKADMRRRVV PLPDSIQELL DIGAEKFGIS LTEVLTEDGA LIEDIALIRD
601: GDHLVLATSE N

Best Arabidopsis Sequence Match ( AT2G26650.1 )
(BLAST)

001: MRGGALLCGQ VQDEIEQLSR ESSHFSLSTG ILPSLGARSN RRVKLRRFVV SPYDHKYRIW EAFLVVLVVY TAWVSPFEFG FLRKPRPPLS ITDNIVNAFF
101: AIDIIMTFFV GYLDKSTYLI VDDRKQIAFK YLRSWFLLDL VSTIPSEAAM RISSQSYGLF NMLRLWRLRR VGALFARLEK DRNFNYFWVR CAKLVCVTLF
201: AVHCAACFYY LIAARNSNPA KTWIGANVAN FLEESLWMRY VTSMYWSITT LTTVGYGDLH PVNTKEMIFD IFYMLFNLGL TAYLIGNMTN LVVHGTSRTR
301: NFRDTIQAAS NFAHRNHLPP RLQDQMLAHL CLKYRTDSEG LQQQETLDAL PKAIRSSISH FLFYSLMDKV YLFRGVSNDL LFQLVSEMKA EYFPPKEDVI
401: LQNEAPTDFY ILVNGTADLV DVDTGTESIV REVKAGDIIG EIGVLCYRPQ LFTVRTKRLC QLLRMNRTTF LNIIQANVGD GTIIMNNLLQ HLKEMNDPVM
501: TNVLLEIENM LARGKMDLPL NLCFAAIRED DLLLHQLLKR GLDPNESDNN GRTPLHIAAS KGTLNCVLLL LEYHADPNCR DAEGSVPLWE AMVEGHEKVV
601: KVLLEHGSTI DAGDVGHFAC TAAEQGNLKL LKEIVLHGGD VTRPRATGTS ALHTAVCEEN IEMVKYLLEQ GADVNKQDMH GWTPRDLAEQ QGHEDIKALF
701: REKLHERRVH IETSSSVPIL KTGIRFLGRF TSEPNIRPAS REVSFRIRET RARRKTNNFD NSLFGILANQ SVPKNGLATV DEGRTGNPVR VTISCAEKDD
801: IAGKLVLLPG SFKELLELGS NKFGIVATKV MNKDNNAEID DVDVIRDGDH LIFATDS

Arabidopsis Description

AKT1Potassium channel AKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q38998]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.