CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0445000-01	Rice	cytosol	53.52	85.46
Zm00001d003555_P001	Maize	plasma membrane	87.31	84.97
TraesCS2B01G329800.1	Wheat	plasma membrane	82.62	82.85
TraesCS2A01G312800.1	Wheat	plasma membrane	81.79	82.02
TraesCS2D01G311300.1	Wheat	plasma membrane	81.66	77.89
HORVU2Hr1G077680.12	Barley	cytosol	80.83	76.4
GSMUA_Achr3P16730_001	Banana	plasma membrane	64.69	64.96
VIT_18s0089g01300.t01	Wine grape	plasma membrane	64.14	63.7
KXG19708	Sorghum	cytosol	59.17	50.23
EES01496	Sorghum	mitochondrion, plasma membrane	23.45	32.08
KXG22060	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	26.07	27.19
EES19575	Sorghum	plastid	30.62	26.52
EES03354	Sorghum	plastid	32.14	26.33
KXG22064	Sorghum	plastid	30.34	26.13
KXG22062	Sorghum	plastid	5.66	25.79
OQU87429	Sorghum	mitochondrion	22.07	25.6
EES06576	Sorghum	plasma membrane	24.55	24.42
EER95927	Sorghum	plastid	30.62	24.16
EES07044	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	19.03	22.96

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	UniProt:C5Y975	EnsemblPlants:EES10868	ProteinID:EES10868	ProteinID:EES10868.2	GO:GO:0003674
GO:GO:0005215	GO:GO:0005216	GO:GO:0005249	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595	InterPro:IPR002110
InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR036770	InterPro:Ion_trans_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027
PFAM:PF00520	PFAM:PF12796	PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR10217	PANTHER:PTHR10217:SF478	InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248
EnsemblPlantsGene:SORBI_3006G093400	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI00081AC102
InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:46326045..46330743

Molecular Weight (calculated)

82249.9 Da

IEP (calculated)

8.338

GRAVY (calculated)

0.039

Length

725 amino acids

Sequence
(BLAST)

001: MEREMSAEYE LNEIDAADTL HGSVGSRLSL FARELKSRRS SWQSSSALRL PQNCFYGSFV IHPNGRWYRI WSTAMFLWSI YSTFFTPFEF GFFRGLPEHL
101: LDLECVQLVF LADVAVHFFL AYRDAHTYRM VYDKRKIALR YIKGSFALDI LGCFPWDFIY KATGRTEVVR CLVWLRLYRA RNILAFFKRM EKDIRISYLF
201: TRIVKLITVE LHFTHTAACV FYYLATTLPP AREGGTWIGS LTLGGTRYIS FREMDLLTRY VTSLYLAIVT MATVGYGDVH AVNPREMVFT VVYISFSILL
301: SAYLIGNMTA LIVKGSKTER FRDKMTDLIR YMNRNKLGAG IRSQVKDHLL LQYESSYTRD RVVDDIPVAV RSKMSQTLYL DMVSRVHLFR GCSEDFLSQI
401: VVKLHEEFFL PGEVILEQGT VVDQIYIVVH GCLEEVATGE DGSEEIISEL LPYDIIGDVS VVCNVPQPHT VRVCELCSLL RIDKQSLTSI LQIYFKDSRQ
501: ILSNLLKGRA TESKGKQLES DITYLISRQE AELVLGVNNA AYHGDLFRLK GLISAGADPS KPDHDGRTAL HVAALRGYED IVRFLIQRGA NVNSIDKFGN
601: SPLLLALKSG HERITSLLVK HGATLNLEDA GGYLCRVVTD GKVDLLKRLL RFGVDPNCKN YDQRTPLHVA AAEGLHLVAT MLVDFGADVL AKDRWGNTPL
701: DEGRRCSSRP LVRILEQART VAVTL

Best Arabidopsis Sequence Match ( AT3G02850.2 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKG SFIGI

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.