CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05438

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	EES05438	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040536_P005	Maize	nucleus	79.64	84.83
Zm00001d008205_P001	Maize	nucleus	81.13	76.8
Os01t0286100-01	Rice	nucleus	69.54	65.93
VIT_07s0005g02510.t01	Wine grape	nucleus	14.4	43.5
GSMUA_Achr5P18390_001	Banana	nucleus	33.77	33.66
KRH69138	Soybean	cytosol, nucleus, vacuole	9.93	33.33
EES11436	Sorghum	nucleus	9.93	31.91
KXG21255	Sorghum	nucleus	36.09	31.69
VIT_14s0060g00260.t01	Wine grape	nucleus	33.61	28.63
Bra020017.1-P	Field mustard	nucleus	23.01	28.14
CDX94963	Canola	nucleus	23.01	27.91
CDY64745	Canola	nucleus	23.18	27.89
CDY06358	Canola	nucleus	22.52	27.7
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	26.99	27.49
Bra031668.1-P	Field mustard	nucleus	22.35	27.44
CDY22636	Canola	nucleus	22.02	27.09
KRH33733	Soybean	nucleus	30.96	27.06
AT1G09530.3	Thale cress	nucleus	23.18	26.72
KXG31309	Sorghum	nucleus	12.91	26.71
Solyc01g102300.2.1	Tomato	nucleus	31.29	26.43
KRG90443	Soybean	nucleus	31.46	26.32
PGSC0003DMT400047079	Potato	nucleus	30.46	25.99
KRH68390	Soybean	nucleus	26.32	25.48
KRG96663	Soybean	nucleus	26.16	24.96
OQU75890	Sorghum	nucleus	11.76	24.4
KRH33663	Soybean	nucleus	17.72	23.83
OQU91282	Sorghum	nucleus	21.03	23.52
KXG23955	Sorghum	nucleus	18.38	23.37
OQU88421	Sorghum	nucleus	15.89	23.24
CDX67873	Canola	nucleus	11.76	23.13
Bra003483.1-P	Field mustard	nucleus	11.76	23.13
AT2G46970.1	Thale cress	nucleus	15.56	22.6
Bra004489.1-P	Field mustard	nucleus	14.9	22.5
CDX80064	Canola	nucleus	14.9	22.5
KRH68348	Soybean	nucleus	18.87	22.05
AT3G62090.2	Thale cress	nucleus	13.24	22.04
CDY65446	Canola	nucleus	11.92	21.75
Bra000436.1-P	Field mustard	nucleus	14.4	21.53
CDX83349	Canola	nucleus	14.4	21.53
CDY66254	Canola	nucleus	14.07	21.25
KRG96615	Soybean	nucleus	17.55	20.46
CDY50911	Canola	nucleus	9.11	20.3
OQU88567	Sorghum	nucleus	9.27	20.22
KXG37359	Sorghum	nucleus	9.27	19.72
CDY11401	Canola	extracellular	11.09	19.03
CDX76616	Canola	extracellular	11.26	18.99
OQU92150	Sorghum	nucleus	15.56	17.5
EES05953	Sorghum	nucleus	11.26	17.3
KXG37432	Sorghum	plastid	13.58	17.01
Bra007660.1-P	Field mustard	nucleus	11.09	15.88
OQU89497	Sorghum	nucleus	11.76	15.27
EER89334	Sorghum	nucleus	10.93	14.77
KXG30460	Sorghum	nucleus	10.6	12.65
KXG19523	Sorghum	nucleus	9.27	11.38

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	UniProt:A0A1B6Q304	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009987	GO:GO:0046983	GO:GO:0090229	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlants:KXG32305	ProteinID:KXG32305	ProteinID:KXG32305.1	ProteinID:KXG32306.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	SMART:SM00353	EnsemblPlantsGene:SORBI_3003G136900	SUPFAM:SSF47459
UniParc:UPI00081AD99F	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:13096948..13100024

Molecular Weight (calculated)

64619.7 Da

IEP (calculated)

6.301

GRAVY (calculated)

-0.594

Length

604 amino acids

Sequence
(BLAST)

001: MSDSNEFAEL LWENGQAVVH GRRKQTQAAF PPFTCGAASS SRAQEKQPGT DPVALLKTGL FGDFSSGLDA TRDNVDLDDT VPWINYPIVE EDTAAPALAE
101: SYSPDFFSEL HAAAVAAAAT NLSALPPPVQ HTGNNNNRST PVATTSRGPE PAKETHRIPI AGPATRPEPQ AEFAATRKPR PEGGGEGLMN FSLFSRPAAM
201: ARASLQRPPQ TGTDKASNVT TSTRVESTVL QSASGQRTAP VFADQRTPWS QSKEVRFSCA AAPTTATAGN LQQEMPRDMT PQKKVETRKA SEVAVATSSV
301: CSGNGAGIGN DESWRQQKRK SQAECSASQD DDLDDDSGGM RRSGSRGTKR SRTAEVHNLS ERRRRDRINE KMRALQELIP NCNKIDKASM LDEAIEYLKT
401: LQLQVQMMSM GSGLCIPPML LPPTMQHLQI PPIAHFPHLG MGLGYGMGVL DMNSTAAVPF PPMPGAHFPC SMIPGTPPQG LGMPGRNTMP MFGVPGQAIH
501: PSASSIQPFP SLAGLPVRPN LAPQASAVMA NMVQEQQQGA TQQQQSLNNE AQQGANTGDP QLQTTVQAEN QHFSVPYSAQ TESNQFLDGG GNRTDTTGRN
601: EAET

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.