Factsheet for GSMUA_Achr1P19000_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P04570_001
GSMUA_Achr9P19550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	GSMUA_Achr10P...	AT5G61380.1	11828029
AT2G46970.1	GSMUA_Achr2P04570_001	AT5G61380.1	11828029
AT2G46970.1	GSMUA_Achr9P19550_001	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11300_001	Banana	nucleus	6.91	65.08
VIT_07s0005g02510.t01	Wine grape	nucleus	13.66	40.5
GSMUA_Achr1P16830_001	Banana	extracellular	12.98	29.96
GSMUA_Achr6P31370_001	Banana	nucleus	18.72	29.84
Zm00001d024783_P001	Maize	nucleus	24.62	28.91
GSMUA_Achr5P18390_001	Banana	nucleus	29.01	28.38
KRH69138	Soybean	cytosol, nucleus, vacuole	8.6	28.33
Bra031668.1-P	Field mustard	nucleus	23.27	28.05
HORVU1Hr1G017900.1	Barley	nucleus	23.27	27.99
Os05t0139100-01	Rice	nucleus	23.78	27.92
TraesCS1D01G084200.1	Wheat	nucleus	23.61	27.89
TraesCS1A01G083000.1	Wheat	nucleus	23.78	27.81
CDY06358	Canola	nucleus	22.93	27.7
CDY22636	Canola	nucleus	22.93	27.7
TraesCS1B01G100400.2	Wheat	nucleus	23.44	27.69
KRH33733	Soybean	nucleus	31.87	27.35
Zm00001d040536_P005	Maize	nucleus	25.97	27.16
Bra020017.1-P	Field mustard	nucleus	22.6	27.13
KXG32305	Sorghum	nucleus	27.49	26.99
CDY64745	Canola	nucleus	22.77	26.89
CDX94963	Canola	nucleus	22.43	26.71
KRG90443	Soybean	nucleus	32.38	26.59
AT1G09530.3	Thale cress	nucleus	23.1	26.14
KRH68390	Soybean	nucleus	26.81	25.48
Solyc01g102300.2.1	Tomato	nucleus	30.69	25.45
KRG96663	Soybean	nucleus	27.15	25.43
PGSC0003DMT400047079	Potato	nucleus	30.19	25.28
Os01t0286100-01	Rice	nucleus	27.15	25.27
GSMUA_Achr6P30080_001	Banana	nucleus	16.86	24.94
Zm00001d008205_P001	Maize	nucleus	25.63	23.82
GSMUA_Achr8P15670_001	Banana	nucleus	14.17	23.8
GSMUA_Achr10P...	Banana	plastid	13.66	23.62
CDX67873	Canola	nucleus	12.14	23.45
Bra003483.1-P	Field mustard	nucleus	12.14	23.45
KRH68348	Soybean	nucleus	20.24	23.21
KRH33663	Soybean	nucleus	17.2	22.72
CDX80064	Canola	nucleus	15.18	22.5
Bra004489.1-P	Field mustard	nucleus	15.18	22.5
AT3G62090.2	Thale cress	nucleus	13.66	22.31
CDY66254	Canola	nucleus	15.01	22.25
CDY65446	Canola	nucleus	12.31	22.05
AT2G46970.1	Thale cress	nucleus	15.35	21.88
GSMUA_Achr5P02280_001	Banana	nucleus	20.07	21.88
KRG96615	Soybean	nucleus	19.06	21.81
KXG21255	Sorghum	nucleus	25.3	21.8
Bra000436.1-P	Field mustard	nucleus	14.5	21.29
CDX83349	Canola	nucleus	14.5	21.29
CDY50911	Canola	nucleus	9.61	21.03
GSMUA_Achr4P31770_001	Banana	nucleus	19.73	19.73
GSMUA_Achr4P21070_001	Banana	nucleus	9.61	19.0
GSMUA_Achr5P03100_001	Banana	nucleus	8.77	18.98
CDX76616	Canola	extracellular	11.13	18.44
CDY11401	Canola	extracellular	10.79	18.18
GSMUA_Achr10P...	Banana	nucleus	11.13	16.5
GSMUA_Achr9P25560_001	Banana	nucleus	9.61	16.15
GSMUA_Achr5P16470_001	Banana	nucleus	12.31	16.04
GSMUA_Achr4P01910_001	Banana	nucleus	12.14	16.04
Bra007660.1-P	Field mustard	nucleus	10.96	15.4
GSMUA_Achr10P...	Banana	nucleus	11.3	15.23
GSMUA_Achr3P04630_001	Banana	nucleus	11.47	13.93
GSMUA_Achr7P20810_001	Banana	nucleus	13.32	13.19
GSMUA_Achr9P18080_001	Banana	nucleus	10.46	12.78
GSMUA_Achr3P10120_001	Banana	nucleus	10.79	11.74

Protein Annotations

EnsemblPlants:GSMUA_Achr1P19000_001	EnsemblPlants:GSMUA_Achr1T19000_001	EnsemblPlantsGene:GSMUA_Achr1G19000_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000295D0EF	UniProt:M0S158	MapMan:15.5.32	MapMan:26.1.1.4	:

Description

Putative helix-loop-helix DNA-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G19000_001]

Coordinates

chr1:-:14181213..14183709

Molecular Weight (calculated)

63615.9 Da

IEP (calculated)

7.319

GRAVY (calculated)

-0.516

Length

593 amino acids

Sequence
(BLAST)

001: MQCKSTRPRK SSFPSAFSQY GGLQEKDSRG SASSKVAHFS EVDRAVDDFA PSGHSGVSAR GGDDDDMVPW INYPIDEVLA SETLENDYCA EFMNEFTAFD
101: LNPVSAHRNT VAASRCASSG VDVRNSGNVE NQHASKAPAG CSESARTRTG HLFQLPQQCQ SSVPNSKSTQ QQPNSTASLM NFSHFARPAA LAKVSLQNVG
201: GLRSTEKVNS VSRSNPITSA PIASTNGVKD ISRASKLSAL DSHKLDLGPV MKALREGGLV AQPDAICLDI ASKNNNKTDE CTKLPDNVPS SSLAASMALC
301: RNDTRKDPDA VVASSSICSR NLTGAASNEP RHMEKRKEYE GDESDYHSDD LQDESVGTRR PANGRVARTK RSRAAEVHNL SERRRRNRIN EKMRALQELI
401: PNCNKVVDKA SMLEEAIEYL KTLQLQVQIM SMGNGLYMPP MMFPLAMPHI RAPTMAPFPP VGVGMGAGIG VAPGCPMIRI PPVHAPQFPC TPNSGQLNLR
501: GIPGPVSPQM YGIQGHGIPV VIPGPPPFGT LPGFSMNSVA DQVPGTMAVV AHPDPATAGT GDQQQRNSNV EPRTSTEEEP QIQASTEATK ECF

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.