Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P11300_001 | Banana | nucleus | 9.48 | 60.32 |
| GSMUA_Achr6P31370_001 | Banana | nucleus | 36.91 | 39.78 |
| GSMUA_Achr5P02280_001 | Banana | nucleus | 53.87 | 39.71 |
| GSMUA_Achr4P31770_001 | Banana | nucleus | 54.86 | 37.1 |
| TraesCS5A01G049600.1 | Wheat | nucleus | 24.94 | 29.76 |
| TraesCS5B01G054800.2 | Wheat | nucleus | 24.94 | 29.5 |
| HORVU5Hr1G011780.1 | Barley | nucleus | 24.94 | 29.33 |
| GSMUA_Achr1P16830_001 | Banana | extracellular | 18.2 | 28.4 |
| TraesCS5D01G060300.1 | Wheat | nucleus | 24.69 | 28.29 |
| Os12t0610200-01 | Rice | nucleus | 30.42 | 27.42 |
| Zm00001d031044_P001 | Maize | nucleus | 26.43 | 26.57 |
| KXG23955 | Sorghum | nucleus | 30.42 | 25.68 |
| TraesCS5B01G380200.1 | Wheat | nucleus | 27.43 | 24.61 |
| TraesCS5A01G376500.1 | Wheat | nucleus | 28.18 | 23.2 |
| OQU91282 | Sorghum | nucleus | 30.42 | 22.59 |
| TraesCS5D01G386500.1 | Wheat | nucleus | 28.68 | 22.29 |
| Zm00001d033267_P001 | Maize | nucleus | 29.68 | 21.72 |
| HORVU5Hr1G093310.11 | Barley | nucleus | 29.18 | 21.39 |
| GSMUA_Achr10P... | Banana | plastid | 16.71 | 19.53 |
| GSMUA_Achr8P15670_001 | Banana | nucleus | 16.71 | 18.98 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 12.47 | 18.25 |
| GSMUA_Achr5P18390_001 | Banana | nucleus | 25.94 | 17.16 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 24.94 | 16.86 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 12.47 | 16.67 |
| GSMUA_Achr4P01910_001 | Banana | nucleus | 16.71 | 14.92 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 12.97 | 14.73 |
| GSMUA_Achr10P... | Banana | nucleus | 15.96 | 14.55 |
| GSMUA_Achr3P04630_001 | Banana | nucleus | 16.46 | 13.52 |
| GSMUA_Achr5P16470_001 | Banana | nucleus | 14.96 | 13.19 |
| GSMUA_Achr10P... | Banana | nucleus | 12.97 | 13.0 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 18.95 | 12.69 |
| GSMUA_Achr9P18080_001 | Banana | nucleus | 13.72 | 11.34 |
| GSMUA_Achr3P10120_001 | Banana | nucleus | 12.97 | 9.54 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr6G30080_001 | EnsemblPlants:GSMUA_Achr6P30080_001 | EnsemblPlants:GSMUA_Achr6T30080_001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0TBF3 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000295CD46 | InterPro:bHLH_dom | SEG:seg |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G30080_001]
Coordinates
chr6:-:30171021..30172837
Molecular Weight (calculated)
44609.7 Da
IEP (calculated)
6.818
GRAVY (calculated)
-0.576
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQYAPNWSL VDQKKPMGLD SELVELLWQD MHVAMHTQSN HGASAINDES KPDQEPQCER SLDRSAGLIQ VDETVSWLQY PLDDPPAKEF CSDFFSEMAG
101: IGVIGVPTES TAFTATCPPR PPQSCKAQAS SFGDGDASIC GSNQIHAQAD LSRDSAAAAT KGMPSETEQK HAYETTLTSS SGGSDCSVRR MRKQIFGSNR
201: SQKRRKRDAD DQSEEAEIES MEAKKLAQRS TATRRSRAAE VHNLSERRRR DRINEKMKAL QELIPRCNKT DKASMLDEAI GYMKSLQLQV QMMWMGSAMA
301: QMMFPGVQQY MSHASVPWMH HAVQVPSVPV IHHSAGSYTN HLCLSPALHA ANFQNQMQGF HVQESSYVPC HGFHHLQPHS QACSSIFTPL HLCLFAEITP
401: M
101: IGVIGVPTES TAFTATCPPR PPQSCKAQAS SFGDGDASIC GSNQIHAQAD LSRDSAAAAT KGMPSETEQK HAYETTLTSS SGGSDCSVRR MRKQIFGSNR
201: SQKRRKRDAD DQSEEAEIES MEAKKLAQRS TATRRSRAAE VHNLSERRRR DRINEKMKAL QELIPRCNKT DKASMLDEAI GYMKSLQLQV QMMWMGSAMA
301: QMMFPGVQQY MSHASVPWMH HAVQVPSVPV IHHSAGSYTN HLCLSPALHA ANFQNQMQGF HVQESSYVPC HGFHHLQPHS QACSSIFTPL HLCLFAEITP
401: M
001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
Arabidopsis Description
PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.