Factsheet for GSMUA_Achr10P09040_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P01290_001
GSMUA_Achr6P18580_001
GSMUA_Achr7P23410_001
GSMUA_Achr9P15380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	GSMUA_Achr9P15380_001	AT3G50330.1	17855426
AT4G36930.1	GSMUA_Achr11P...	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr5P01290_001	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr6P18580_001	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr7P23410_001	AT5G09750.1	17855426
AT4G36930.1	GSMUA_Achr9P15380_001	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11300_001	Banana	nucleus	13.7	74.6
CDY37185	Canola	mitochondrion	16.33	57.14
GSMUA_Achr8P15670_001	Banana	nucleus	58.31	56.66
KRH04595	Soybean	nucleus	31.78	40.07
KRH04711	Soybean	plastid	17.49	37.5
KRH28453	Soybean	nucleus	29.74	35.05
AT5G67110.1	Thale cress	nucleus	20.41	33.33
KRH05665	Soybean	nucleus	28.57	33.0
Bra012133.1-P	Field mustard	nucleus, plastid	20.41	32.71
KRH15381	Soybean	nucleus	28.28	32.66
Solyc04g078690.2.1	Tomato	nucleus	29.45	32.17
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	36.44	31.73
CDY24734	Canola	plastid	13.12	31.69
CDY01438	Canola	nucleus, plastid	20.12	31.65
CDY12804	Canola	nucleus, plastid	19.83	31.48
CDX75629	Canola	nucleus	30.9	30.64
VIT_18s0001g10270.t01	Wine grape	nucleus	32.94	30.62
PGSC0003DMT400020534	Potato	nucleus	27.99	30.57
CDY44048	Canola	nucleus, plastid	30.32	30.5
Bra010591.1-P	Field mustard	nucleus, plastid	30.32	30.5
Bra011740.1-P	Field mustard	nucleus, plastid	30.9	29.94
CDY22448	Canola	nucleus, plastid	30.61	29.83
CDX69281	Canola	nucleus, plastid	30.03	29.51
KRH77016	Soybean	nucleus	32.07	29.33
PGSC0003DMT400010253	Potato	nucleus	31.49	28.72
Solyc02g093280.2.1	Tomato	nucleus	31.49	28.57
AT4G36930.1	Thale cress	nucleus	30.61	28.15
GSMUA_Achr1P16830_001	Banana	extracellular	17.2	22.96
GSMUA_Achr6P31370_001	Banana	nucleus	22.16	20.43
GSMUA_Achr6P30080_001	Banana	nucleus	19.53	16.71
GSMUA_Achr7P20810_001	Banana	nucleus	28.28	16.19
GSMUA_Achr5P03100_001	Banana	nucleus	12.83	16.06
GSMUA_Achr4P21070_001	Banana	nucleus	13.12	15.0
GSMUA_Achr5P02280_001	Banana	nucleus	22.45	14.15
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	23.62	13.66
GSMUA_Achr4P31770_001	Banana	nucleus	23.62	13.66
GSMUA_Achr5P18390_001	Banana	nucleus	23.32	13.2
GSMUA_Achr10P...	Banana	nucleus	15.16	13.0
GSMUA_Achr10P...	Banana	nucleus	15.74	12.27
GSMUA_Achr9P25560_001	Banana	nucleus	12.54	12.18
GSMUA_Achr4P01910_001	Banana	nucleus	15.45	11.8
GSMUA_Achr5P16470_001	Banana	nucleus	15.16	11.43
GSMUA_Achr9P18080_001	Banana	nucleus	15.45	10.93
GSMUA_Achr3P04630_001	Banana	nucleus	15.45	10.86
GSMUA_Achr3P10120_001	Banana	nucleus	14.58	9.17

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr10G09040_001	EnsemblPlants:GSMUA_Achr10P09040_001	EnsemblPlants:GSMUA_Achr10T09040_001
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M0RGN0	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	SMART:SM00353	SUPFAM:SSF47459	TMHMM:TMhelix	UniParc:UPI0002955E98
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G09040_001]

Coordinates

chr10:-:19032038..19034696

Molecular Weight (calculated)

37570.0 Da

IEP (calculated)

6.484

GRAVY (calculated)

-0.056

Length

343 amino acids

Sequence
(BLAST)

001: MIVAVCFDSS SSFSCQGGQG RISCFSSSCA VGASSWKAEQ MLTSSCYPIS GGGGGGSGGG SKSLDHDFDS FECESEESVE VPEEHTKPVP ARSSGSKRSR
101: AAEVHNMSEK RRRSRINEKM RALQNLIPNS NKTDKASMLD EAIEYLKQLQ LQVQVSKCCQ VLLSSCCSVV WLVHTNNLVF ELQICTLVSR SLFCLGHIFS
201: FFLYFMLMIN CLLFLFSLQI LSMKNGLNLH SMYLSGGLQP FRTSQTCIGF GLNGNIAMNN RTGMLPLNQD SPVRSSFDLS NQCTTIEPSL INVTNLETPL
301: VNPVESQRGS VQVPVSCEEM LTSDLLTQLY AADYTRDLTG KLS

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.