Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P16830_001 | |
| GSMUA_Achr1P19000_001 | |
| GSMUA_Achr2P19260_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20180.2 | GSMUA_Achr1P16830_001 | AT2G20180.2 | 21928113 |
| AT2G20180.2 | GSMUA_Achr1P19000_001 | AT3G62090.2 | 21928113 |
| AT2G20180.2 | GSMUA_Achr2P19260_001 | AT5G61270.1 | 21928113 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P11300_001 | Banana | nucleus | 14.01 | 57.14 |
| KRH71636 | Soybean | golgi, plasma membrane, vacuole | 29.18 | 49.02 |
| KRH32290 | Soybean | nucleus | 43.19 | 22.61 |
| KRH19683 | Soybean | nucleus | 44.75 | 22.59 |
| KRH67519 | Soybean | nucleus | 43.58 | 22.31 |
| GSMUA_Achr6P31370_001 | Banana | nucleus | 29.96 | 20.7 |
| CDY31989 | Canola | nucleus | 37.74 | 20.38 |
| VIT_07s0005g05100.t01 | Wine grape | mitochondrion, nucleus | 36.19 | 20.13 |
| AT2G20180.2 | Thale cress | nucleus | 36.97 | 19.87 |
| CDY05725 | Canola | nucleus | 38.91 | 19.72 |
| Solyc06g008030.2.1 | Tomato | nucleus | 38.91 | 19.53 |
| PGSC0003DMT400038134 | Potato | nucleus | 38.91 | 19.42 |
| GSMUA_Achr6P30080_001 | Banana | nucleus | 28.4 | 18.2 |
| GSMUA_Achr10P... | Banana | plastid | 22.96 | 17.2 |
| GSMUA_Achr8P15670_001 | Banana | nucleus | 22.18 | 16.15 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 16.34 | 15.33 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 16.34 | 14.0 |
| GSMUA_Achr4P31770_001 | Banana | nucleus | 31.91 | 13.83 |
| GSMUA_Achr5P02280_001 | Banana | nucleus | 29.18 | 13.79 |
| GSMUA_Achr5P18390_001 | Banana | nucleus | 30.74 | 13.04 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 29.96 | 12.98 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 17.12 | 12.46 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 27.63 | 11.85 |
| GSMUA_Achr10P... | Banana | nucleus | 18.29 | 11.75 |
| GSMUA_Achr10P... | Banana | nucleus | 19.07 | 11.14 |
| GSMUA_Achr4P01910_001 | Banana | nucleus | 19.46 | 11.14 |
| GSMUA_Achr5P16470_001 | Banana | nucleus | 19.46 | 10.99 |
| GSMUA_Achr3P04630_001 | Banana | nucleus | 19.46 | 10.25 |
| GSMUA_Achr9P18080_001 | Banana | nucleus | 17.12 | 9.07 |
| GSMUA_Achr3P10120_001 | Banana | nucleus | 17.12 | 8.07 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr1G16830_001 | EnsemblPlants:GSMUA_Achr1P16830_001 | EnsemblPlants:GSMUA_Achr1T16830_001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | UniProt:M0S0J1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 |
| SMART:SM00353 | SUPFAM:SSF47459 | TMHMM:TMhelix | UniParc:UPI000295973D | InterPro:bHLH_dom | SEG:seg |
Description
Putative Transcription factor PIF1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G16830_001]
Coordinates
chr1:+:12533259..12535327
Molecular Weight (calculated)
28628.7 Da
IEP (calculated)
8.710
GRAVY (calculated)
-0.065
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSKCVSSSQ FTLLLPMTFN WAIELPFICH VILLNERLRA AEIHNLSERR RRDRINAKMK ALQELIPRCN KSDKASTLDE AIEYMKSLQL QVQMMSMGCN
101: PGAVMFPGVQ TYMPPMGMGM HMGLGMGMGM GMGLGMRMGT DMAGGNIPRP ILPFGPIPCP PVTAHPPVQF GPRPTCTTPL MPSFHPSPAM PIADQARFEA
201: INQQNHLSDT LNIRSPNMGQ MPHVADPFHH FLNLQCPLVQ SQVTIFVRLS LYQHPFS
101: PGAVMFPGVQ TYMPPMGMGM HMGLGMGMGM GMGLGMRMGT DMAGGNIPRP ILPFGPIPCP PVTAHPPVQF GPRPTCTTPL MPSFHPSPAM PIADQARFEA
201: INQQNHLSDT LNIRSPNMGQ MPHVADPFHH FLNLQCPLVQ SQVTIFVRLS LYQHPFS
001: MDPQQQPSSD QNLFIQEDEM TSWLHYPLRD DDFCSDLLFS AAPTATATAT VSQVTAARPP VSSTNESRPP VRNFMNFSRL RGDFNNGRGG ESGPLLSKAV
101: VRESTQVSPS ATPSAAASES GLTRRTDGTD SSAVAGGGAY NRKGKAVAMT APAIEITGTS SSVVSKSEIE PEKTNVDDRK RKEREATTTD ETESRSEETK
201: QARVSTTSTK RSRAAEVHNL SERKRRDRIN ERMKALQELI PRCNKSDKAS MLDEAIEYMK SLQLQIQMMS MGCGMMPMMY PGMQQYMPHM AMGMGMNQPI
301: PPPSFMPFPN MLAAQRPLPT QTHMAGSGPQ YPVHASDPSR VFVPNQQYDP TSGQPQYPAG YTDPYQQFRG LHPTQPPQFQ NQATSYPSSS RVSSSKESED
401: HGNHTTG
101: VRESTQVSPS ATPSAAASES GLTRRTDGTD SSAVAGGGAY NRKGKAVAMT APAIEITGTS SSVVSKSEIE PEKTNVDDRK RKEREATTTD ETESRSEETK
201: QARVSTTSTK RSRAAEVHNL SERKRRDRIN ERMKALQELI PRCNKSDKAS MLDEAIEYMK SLQLQIQMMS MGCGMMPMMY PGMQQYMPHM AMGMGMNQPI
301: PPPSFMPFPN MLAAQRPLPT QTHMAGSGPQ YPVHASDPSR VFVPNQQYDP TSGQPQYPAG YTDPYQQFRG LHPTQPPQFQ NQATSYPSSS RVSSSKESED
401: HGNHTTG
Arabidopsis Description
PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.