CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, vacuole

Predictor Summary:

nucleus 1
extracellular 4
golgi 5
plasma membrane 5
endoplasmic reticulum 4
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96615
KRG99030
KRH03090
KRH14535
KRH19683
KRH32290
KRH33663
KRH45975
KRH54632
KRH56866
KRH63271
KRH67519
KRH68348
KRH69138
KRH71636
KRH73584

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20180.2	KRH19683	AT2G20180.2	21928113
AT2G20180.2	KRH32290	AT2G20180.2	21928113
AT2G20180.2	KRH67519	AT2G20180.2	21928113
AT2G20180.2	KRH71636	AT2G20180.2	21928113
AT2G20180.2	KRG99030	AT3G59060.2	21928113
AT2G20180.2	KRH14535	AT3G59060.2	21928113
AT2G20180.2	KRH45975	AT3G59060.2	21928113
AT2G20180.2	KRH73584	AT3G59060.2	21928113
AT2G20180.2	KRG96615	AT3G62090.2	21928113
AT2G20180.2	KRH33663	AT3G62090.2	21928113
AT2G20180.2	KRH68348	AT3G62090.2	21928113
AT2G20180.2	KRH69138	AT3G62090.2	21928113
AT2G20180.2	KRH03090	AT5G61270.1	21928113
AT2G20180.2	KRH54632	AT5G61270.1	21928113
AT2G20180.2	KRH56866	AT5G61270.1	21928113
AT2G20180.2	KRH63271	AT5G61270.1	21928113

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76132	Soybean	nucleus	35.29	29.51
GSMUA_Achr1P16830_001	Banana	extracellular	49.02	29.18
KRH72281	Soybean	nucleus, plastid	23.53	28.8
KRH04711	Soybean	plastid	29.41	28.12
KRH55381	Soybean	cytosol	11.76	26.09
KRH32290	Soybean	nucleus	75.82	23.63
KRH28453	Soybean	nucleus	43.14	22.68
KRH04595	Soybean	nucleus	38.56	21.69
KRH69138	Soybean	cytosol, nucleus, vacuole	25.49	21.67
KRH19683	Soybean	nucleus	71.9	21.61
KRH67519	Soybean	nucleus	68.63	20.92
KRH05665	Soybean	nucleus	37.91	19.53
KRH15381	Soybean	nucleus	37.25	19.19
CDY31989	Canola	nucleus	58.17	18.7
KRH71345	Soybean	nucleus	21.57	18.64
AT2G20180.2	Thale cress	nucleus	55.56	17.78
Solyc09g063010.2.1	Tomato	nucleus	64.71	17.77
KRH77016	Soybean	nucleus	42.48	17.33
PGSC0003DMT400048756	Potato	nucleus	65.36	17.3
CDY05725	Canola	nucleus	56.86	17.16
KRH32094	Soybean	nucleus	28.1	15.19
KRH54630	Soybean	nucleus	37.91	14.43
KRH67287	Soybean	nucleus	27.45	14.38
KRG95612	Soybean	nucleus	27.45	14.38
KRH33663	Soybean	nucleus	41.83	14.25
KRH65412	Soybean	nucleus	35.29	13.6
KRH03075	Soybean	nucleus	32.03	13.35
KRH45975	Soybean	nucleus	45.1	13.14
KRG88937	Soybean	nucleus	39.87	13.12
KRH75301	Soybean	nucleus	39.22	13.1
KRG92679	Soybean	nucleus	28.1	12.95
KRH34087	Soybean	nucleus	27.45	12.8
KRG99030	Soybean	nucleus	45.1	12.61
KRH14535	Soybean	nucleus	45.75	12.46
KRH73584	Soybean	nucleus	45.1	12.28
KRH33733	Soybean	nucleus	51.63	11.43
KRG96663	Soybean	nucleus	45.75	11.06
KRG90443	Soybean	nucleus	51.63	10.94
KRH68390	Soybean	nucleus	44.44	10.9
KRH68348	Soybean	nucleus	35.29	10.44
KRH12909	Soybean	nucleus	32.03	10.32
KRG96615	Soybean	nucleus	34.64	10.23
KRH37912	Soybean	nucleus	31.37	9.8
KRH05051	Soybean	nucleus	16.99	6.5
KRH71344	Soybean	cytosol	1.96	4.0

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	UniProt:A0A0R0L6Z7	EMBL:ACUP02000921	ncoils:Coil
EnsemblPlantsGene:GLYMA_02G160200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH71636
ProteinID:KRH71636	ProteinID:KRH71636.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF194
SMART:SM00353	SUPFAM:SSF47459	TMHMM:TMhelix	UniParc:UPI0006EDDA46	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:18095264..18096522

Molecular Weight (calculated)

17608.1 Da

IEP (calculated)

9.797

GRAVY (calculated)

-0.073

Length

153 amino acids

Sequence
(BLAST)

001: MIRAFLLSLF YILQSVYIMF YATYIFLFPL VSLQKDVDFE SPEAKKQVRG STSTKRSHAA EVHNLSERRR RDRINEKMKA LQELIPRCNK SGKASMLDEP
101: IEYLKSLQLQ VQMMSMGCGI IPMIFPGIQQ YMPPMGMAIG MGMGMGMEMR TYT

Best Arabidopsis Sequence Match ( AT2G20180.1 )
(BLAST)

001: MDPQQQPSSD QNLFIQEDEM TSWLHYPLRD DDFCSDLLFS AAPTATATAT VSQVTAARPP VSSTNESRPP VRNFMNFSRL RGDFNNGRGG ESGPLLSKAV
101: VRESTQVSPS ATPSAAASES GLTRRTDGTD SSAVAGGGAY NRKGKAVAMT APAIEITGTS SSVVSKSEIE PEKTNVDDRK RKEREATTTD ETESRSEETK
201: QARVSTTSTK RSRAAEVHNL SERKRRDRIN ERMKALQELI PRCNKSDKAS MLDEAIEYMK SLQLQIQMMS MGCGMMPMMY PGMQQYMPHM AMGMGMNQPI
301: PPPSFMPFPN MLAAQRPLPT QTHMAGSGPQ YPVHASDPSR VFVPNQQYDP TSGQPQYPAG YTDPYQQFRG LHPTQPPQFQ NQATSYPSSS RVSSSKESED
401: HGNHTTG

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.