Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plasma membrane 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | KRH39574 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | KRH74370 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | KRH74373 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63271 | Soybean | cytosol | 45.77 | 73.01 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 32.69 | 37.44 |
| Solyc06g069590.2.1 | Tomato | cytosol | 26.54 | 35.2 |
| KRH03090 | Soybean | nucleus | 33.46 | 34.25 |
| KRH56866 | Soybean | nucleus | 32.31 | 31.7 |
| AT5G61280.1 | Thale cress | nucleus | 26.54 | 26.24 |
| Zm00001d015411_P001 | Maize | nucleus | 10.0 | 15.12 |
| OQU75583 | Sorghum | cytosol | 15.0 | 13.93 |
| KRH70859 | Soybean | nucleus | 13.85 | 13.53 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 15.0 | 12.7 |
| KXG39897 | Sorghum | cytosol | 15.38 | 12.54 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 14.62 | 12.14 |
| KRH50535 | Soybean | nucleus | 15.38 | 12.05 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 14.23 | 11.86 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 14.23 | 11.82 |
| Zm00001d028185_P002 | Maize | cytosol | 14.62 | 11.76 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 14.23 | 11.71 |
| KRH74999 | Soybean | nucleus | 11.92 | 11.65 |
| KRG89501 | Soybean | nucleus | 14.62 | 11.18 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 14.23 | 10.54 |
| Bra012972.1-P | Field mustard | nucleus | 26.54 | 10.3 |
| CDY23073 | Canola | nucleus | 25.77 | 10.28 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 13.85 | 10.26 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 13.85 | 10.26 |
| Zm00001d048109_P002 | Maize | mitochondrion | 13.85 | 10.06 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 13.46 | 9.97 |
| Os03t0211500-01 | Rice | plasma membrane | 11.92 | 9.94 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 14.23 | 9.37 |
| EER90227 | Sorghum | nucleus | 13.08 | 9.09 |
| CDY02159 | Canola | extracellular, golgi | 24.62 | 8.79 |
| Zm00001d014455_P001 | Maize | nucleus | 11.54 | 8.65 |
| AT5G61270.1 | Thale cress | nucleus | 0.0 | 0.0 |
Protein Annotations
| EMBL:ACUP02003555 | EnsemblPlants:KRH54632 | EnsemblPlantsGene:GLYMA_06G199700 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF8 | PFAM:PF03763 | ProteinID:KRH54632 | ProteinID:KRH54632.1 | SEG:seg | UniParc:UPI000295BA5A |
| UniProt:K7KW27 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:18264853..18266457
Molecular Weight (calculated)
30285.6 Da
IEP (calculated)
10.991
GRAVY (calculated)
-1.012
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MLWITLTSSS FTSPKSKVEI KEKFQRMDYR LNQRRVSFSD PNSRQHIPDD ERVTAVAAAA FSIHSLEEAG LLNLQKMKES PKFPRTKTVR EKEWKVSRQP
101: SHGEISTRRS LGQELARATE SAIPARRPSG VSPAAGYQNH KGNQVIQHKN DKATLWEKAK IERIQKRYEK TKSKILAWES YRKIQAKMQM DRKKSEWEHK
201: RAIEMQHYKN KIARIDMIAQ GAISQLEDHK RKQESKAKEK AKKIRKTGRV PVKCFCFKSL
101: SHGEISTRRS LGQELARATE SAIPARRPSG VSPAAGYQNH KGNQVIQHKN DKATLWEKAK IERIQKRYEK TKSKILAWES YRKIQAKMQM DRKKSEWEHK
201: RAIEMQHYKN KIARIDMIAQ GAISQLEDHK RKQESKAKEK AKKIRKTGRV PVKCFCFKSL
001: MDNLVKQRRR RVSISENIKT DLPMLSELDI TDYPALNWLK NQSYWYEKND YYNEKESELA VSVAVAAFVI RSMEEADKQK SKRIREEIKR SRTKKSNLVI
101: PNTQVKRLSK SYTQEVKIGE ESFRKKLLEY PSENRRPQEI GSSSGTSGLA SASSKADSWE KSQIKKIRLR YEKMKADIVG WENERKLAAT LLMEKRKSEL
201: EKRKGINNQH YKSKLARIQL IADGAKKQLE EKRRSKEAQV HGKVKKMSRT GKVPNNYFCF RCY
101: PNTQVKRLSK SYTQEVKIGE ESFRKKLLEY PSENRRPQEI GSSSGTSGLA SASSKADSWE KSQIKKIRLR YEKMKADIVG WENERKLAAT LLMEKRKSEL
201: EKRKGINNQH YKSKLARIQL IADGAKKQLE EKRRSKEAQV HGKVKKMSRT GKVPNNYFCF RCY
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.