Factsheet for VIT_17s0000g06920.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01920.t01
VIT_02s0012g01930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61270.1	VIT_02s0012g01920.t01	AT1G32230.1	19548978
AT5G61270.1	VIT_02s0012g01930.t01	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g069590.2.1	Tomato	cytosol	40.09	46.43
KRH54632	Soybean	nucleus	37.44	32.69
KRH63271	Soybean	cytosol	20.7	28.83
AT5G61280.1	Thale cress	nucleus	33.04	28.52
KRH56866	Soybean	nucleus	30.84	26.42
KRH03090	Soybean	nucleus	28.63	25.59
GSMUA_Achr2P19260_001	Banana	nucleus	20.26	14.98
OQU75583	Sorghum	cytosol	17.62	14.29
Zm00001d015411_P001	Maize	nucleus	9.69	12.79
VIT_01s0011g00820.t01	Wine grape	nucleus	21.15	12.73
KXG39897	Sorghum	cytosol	17.62	12.54
Zm00001d014455_P001	Maize	nucleus	18.06	11.82
Zm00001d028185_P002	Maize	cytosol	16.74	11.76
Os10t0325400-01	Rice	cytosol, nucleus	20.26	11.65
Os03t0211500-01	Rice	plasma membrane	15.86	11.54
TraesCS4D01G250800.1	Wheat	nucleus	15.86	11.5
TraesCS4B01G250900.1	Wheat	cytosol	15.86	11.5
TraesCS4A01G053800.2	Wheat	cytosol	15.42	11.22
TraesCS1A01G057900.1	Wheat	nucleus	17.18	11.11
TraesCS1D01G058700.1	Wheat	nucleus	17.18	11.11
Bra012972.1-P	Field mustard	nucleus	32.6	11.04
EER90227	Sorghum	nucleus	18.06	10.96
Zm00001d048109_P002	Maize	mitochondrion	17.18	10.89
CDY23073	Canola	nucleus	31.28	10.89
HORVU1Hr1G011610.2	Barley	cytosol	16.74	10.83
TraesCS1B01G075600.1	Wheat	nucleus	16.3	10.54
HORVU4Hr1G068900.21	Barley	cytosol	13.66	9.81
CDY02159	Canola	extracellular, golgi	28.19	8.79
AT5G61270.1	Thale cress	nucleus	0.0	0.0

Protein Annotations

ArrayExpress:VIT_17s0000g06920	EMBL:FN594950	EnsemblPlants:VIT_17s0000g06920.t01	EnsemblPlantsGene:VIT_17s0000g06920	EntrezGene:104882298	InterPro:Remorin_C
ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF8	PFAM:PF03763	ProteinID:CBI15154	ProteinID:CBI15154.3
RefSeq:XP_010663299.1	RefSeq:XP_010663300.1	SEG:seg	UniParc:UPI00019851ED	UniProt:D7SI44	MapMan:35.2

Description

No Description!

Coordinates

chr17:+:7601907..7603004

Molecular Weight (calculated)

26057.8 Da

IEP (calculated)

10.399

GRAVY (calculated)

-1.074

Length

227 amino acids

Sequence
(BLAST)

001: MSKDYDSDDE EFATAVAAAA FAIYTLEEPN LQYQKRTRDG LETSMSRLKS RKEDTTGFFG KETQTPGEAS IRRQMTNNGN SMENAFPSSR PSKASPVRSV
101: SAAPRDQRQQ GYSTSNRSVE TKADAWEKAQ ITKIKKRNDN ISSRILAWEN EKKMRAKLIM ERKKSELEQR KALNLQHYQI KIERIDQIAG GARAQLQEKR
201: RNEESEVKHK AEMIRKTGKV PVRCFCF

Best Arabidopsis Sequence Match ( AT5G61280.2 )
(BLAST)

001: MLSELDITDY PALNWLKNQS YWYEKNDYYN EKESELAVSV AVAAFVIRSM EEADKQKSKR IREEIKRSRT KKSNLVIPNT QVKRLSKSYT QEVKIGEESF
101: RKKLLEYPSE NRRPQEIGSS SGTSGLASAS SKADSWEKSQ IKKIRLRYEK MKADIVGWEN ERKLAATLLM EKRKSELEKR KGINNQHYKS KLARIQLIAD
201: GAKKQLEEKR RSKEAQVHGK VKKMSRTGKV PNNYFCFRCY

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.