Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G053800.2 | Wheat | cytosol | 95.21 | 95.51 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 94.25 | 94.25 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 81.47 | 80.7 |
| Zm00001d015411_P001 | Maize | nucleus | 38.66 | 70.35 |
| OQU75583 | Sorghum | cytosol | 61.34 | 68.57 |
| KXG39897 | Sorghum | cytosol | 68.05 | 66.77 |
| Os03t0211500-01 | Rice | plasma membrane | 62.62 | 62.82 |
| Zm00001d028185_P002 | Maize | cytosol | 64.54 | 62.54 |
| Zm00001d048109_P002 | Maize | mitochondrion | 62.3 | 54.47 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 47.28 | 42.17 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 10.86 | 31.78 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 10.86 | 31.78 |
| AT1G69325.1 | Thale cress | nucleus | 11.5 | 30.0 |
| CDY44060 | Canola | nucleus | 10.22 | 29.91 |
| Bra038312.1-P | Field mustard | nucleus | 10.22 | 29.91 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 27.48 | 28.01 |
| KRH50535 | Soybean | nucleus | 27.48 | 25.9 |
| KRG89501 | Soybean | nucleus | 27.48 | 25.29 |
| KRH70859 | Soybean | nucleus | 20.45 | 24.06 |
| KRH63271 | Soybean | cytosol | 12.14 | 23.31 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 15.34 | 23.08 |
| Bra019698.1-P | Field mustard | nucleus | 23.64 | 22.84 |
| Solyc05g012550.2.1 | Tomato | nucleus | 27.8 | 22.6 |
| KRH74999 | Soybean | nucleus | 19.17 | 22.56 |
| CDX98136 | Canola | nucleus | 22.68 | 21.91 |
| CDY36418 | Canola | nucleus | 22.36 | 21.67 |
| Bra016720.1-P | Field mustard | nucleus | 23.0 | 21.11 |
| Solyc04g005470.2.1 | Tomato | nucleus | 21.09 | 20.95 |
| CDX96876 | Canola | nucleus | 22.68 | 20.76 |
| CDY34554 | Canola | nucleus | 22.36 | 20.47 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 24.6 | 20.42 |
| AT1G13920.4 | Thale cress | nucleus | 22.68 | 18.78 |
| Solyc06g069590.2.1 | Tomato | cytosol | 10.86 | 17.35 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 11.5 | 15.86 |
| AT5G61280.1 | Thale cress | nucleus | 13.1 | 15.59 |
| KRH03090 | Soybean | nucleus | 12.14 | 14.96 |
| KRH54632 | Soybean | nucleus | 11.82 | 14.23 |
| KRH56866 | Soybean | nucleus | 10.22 | 12.08 |
| CDY23073 | Canola | nucleus | 16.61 | 7.98 |
| Bra012972.1-P | Field mustard | nucleus | 14.06 | 6.57 |
| CDY02159 | Canola | extracellular, golgi | 12.78 | 5.49 |
| AT5G61270.1 | Thale cress | nucleus | 2.56 | 2.19 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G250900.1 | EnsemblPlantsGene:TraesCS4B01G250900 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF38 |
| PFAM:PF03763 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:517264623..517266563
Molecular Weight (calculated)
34658.1 Da
IEP (calculated)
10.575
GRAVY (calculated)
-1.107
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGNLKALRV QFSGVNKRDK GGREDSIILP QENSALGRAQ MDSGDEYNAI FAATIAAAAY AIAAEEEKQK ASPIQPPTKR GESMRKPTGG SKISRWFSAK
101: ERAEDADEGP ANVSVRRPLK PEQRKPGGVG SDQKVPLPPP PKMHDSSVGA KKAPGSSRKS PDKKGSKRFE QEQAVQRVPS AVRPATSYQS RRNDDGAAGV
201: TAIAGTQTKA DAWEKERLAR VREEYEKMME TIAEWETEKK VKAKRQKEQK EVTLDRKRAK QLAEYNQEMT RINKIAGGAR SMAGERKYED EKKIREKAKK
301: IRSTGKSPRG CCF
101: ERAEDADEGP ANVSVRRPLK PEQRKPGGVG SDQKVPLPPP PKMHDSSVGA KKAPGSSRKS PDKKGSKRFE QEQAVQRVPS AVRPATSYQS RRNDDGAAGV
201: TAIAGTQTKA DAWEKERLAR VREEYEKMME TIAEWETEKK VKAKRQKEQK EVTLDRKRAK QLAEYNQEMT RINKIAGGAR SMAGERKYED EKKIREKAKK
301: IRSTGKSPRG CCF
001: MDNLVKQRRR RVSISENIKT DLPMLSELDI TDYPALNWLK NQSYWYEKND YYNEKESELA VSVAVAAFVI RSMEEADKQK SKRIREEIKR SRTKKSNLVI
101: PNTQVKRLSK SYTQEVKIGE ESFRKKLLEY PSENRRPQEI GSSSGTSGLA SASSKADSWE KSQIKKIRLR YEKMKADIVG WENERKLAAT LLMEKRKSEL
201: EKRKGINNQH YKSKLARIQL IADGAKKQLE EKRRSKEAQV HGKVKKMSRT GKVPNNYFCF RCY
101: PNTQVKRLSK SYTQEVKIGE ESFRKKLLEY PSENRRPQEI GSSSGTSGLA SASSKADSWE KSQIKKIRLR YEKMKADIVG WENERKLAAT LLMEKRKSEL
201: EKRKGINNQH YKSKLARIQL IADGAKKQLE EKRRSKEAQV HGKVKKMSRT GKVPNNYFCF RCY
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.