Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012821_P003 | |
| Zm00001d014423_P002 | |
| Zm00001d030110_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | Zm00001d012821_P003 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | Zm00001d014423_P002 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | Zm00001d030110_P001 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU75583 | Sorghum | cytosol | 85.47 | 52.5 |
| Zm00001d028185_P002 | Maize | cytosol | 94.77 | 50.46 |
| KXG39897 | Sorghum | cytosol | 85.47 | 46.08 |
| Zm00001d048109_P002 | Maize | mitochondrion | 81.4 | 39.11 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 70.35 | 38.78 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 70.35 | 38.66 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 67.44 | 37.06 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 63.95 | 34.81 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 20.93 | 33.64 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 20.93 | 33.64 |
| AT1G69325.1 | Thale cress | nucleus | 23.26 | 33.33 |
| Os03t0211500-01 | Rice | plasma membrane | 60.47 | 33.33 |
| Bra038312.1-P | Field mustard | nucleus | 19.77 | 31.78 |
| CDY44060 | Canola | nucleus | 19.77 | 31.78 |
| Zm00001d014455_P001 | Maize | nucleus | 43.02 | 21.33 |
| KRH70859 | Soybean | nucleus | 31.4 | 20.3 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 24.42 | 20.19 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 35.47 | 19.87 |
| KRH74999 | Soybean | nucleus | 29.07 | 18.8 |
| KRH50535 | Soybean | nucleus | 34.3 | 17.77 |
| KRG89501 | Soybean | nucleus | 33.14 | 16.76 |
| CDY36418 | Canola | nucleus | 30.23 | 16.1 |
| KRH63271 | Soybean | cytosol | 15.12 | 15.95 |
| CDY34554 | Canola | nucleus | 31.4 | 15.79 |
| Bra019698.1-P | Field mustard | nucleus | 29.07 | 15.43 |
| Bra016720.1-P | Field mustard | nucleus | 30.23 | 15.25 |
| CDX98136 | Canola | nucleus | 28.49 | 15.12 |
| CDX96876 | Canola | nucleus | 29.65 | 14.91 |
| Solyc04g005470.2.1 | Tomato | nucleus | 26.74 | 14.6 |
| Solyc05g012550.2.1 | Tomato | nucleus | 31.4 | 14.03 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 28.49 | 13.0 |
| AT1G13920.4 | Thale cress | nucleus | 28.49 | 12.96 |
| AT5G61280.1 | Thale cress | nucleus | 16.28 | 10.65 |
| Solyc06g069590.2.1 | Tomato | cytosol | 11.63 | 10.2 |
| KRH54632 | Soybean | nucleus | 15.12 | 10.0 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 12.79 | 9.69 |
| KRH03090 | Soybean | nucleus | 8.72 | 5.91 |
| CDY23073 | Canola | nucleus | 19.19 | 5.06 |
| Bra012972.1-P | Field mustard | nucleus | 17.44 | 4.48 |
| KRH56866 | Soybean | nucleus | 6.4 | 4.15 |
| CDY02159 | Canola | extracellular, golgi | 17.44 | 4.12 |
| AT5G61270.1 | Thale cress | nucleus | 4.07 | 1.91 |
Protein Annotations
| EnsemblPlants:Zm00001d015411_P001 | EnsemblPlants:Zm00001d015411_T001 | EnsemblPlantsGene:Zm00001d015411 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF38 | PFAM:PF03763 | ProteinID:AQK68796.1 | SEG:seg | UniParc:UPI0008446ED1 | UniProt:A0A1D6H1P0 |
| MapMan:35.2 | : | : | : | : | : |
Description
Remorin family protein
Coordinates
chr5:-:89059774..89060808
Molecular Weight (calculated)
19348.0 Da
IEP (calculated)
10.451
GRAVY (calculated)
-1.225
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MLETSLGVRK GSGSSSRLAD RKGSKEFEQE QAVQKAPSAV RPATSYRSGR NGEGAAGVAA TGGTRSKADE WEKAKLGRVR EEYEKMMETI AEWETEKKVK
101: ARRQKEQKET ELDKKREKAL EEYNLEMTRI SKISGGARAM AEERKYNDGK KIREKAHKMR STGKPPRTCA CF
101: ARRQKEQKET ELDKKREKAL EEYNLEMTRI SKISGGARAM AEERKYNDGK KIREKAHKMR STGKPPRTCA CF
001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.