Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g069590.2.1 | Tomato | cytosol | 25.86 | 34.69 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 28.52 | 33.04 |
| KRH63271 | Soybean | cytosol | 16.73 | 26.99 |
| KRH54632 | Soybean | nucleus | 26.24 | 26.54 |
| CDY23073 | Canola | nucleus | 61.22 | 24.69 |
| KRH03090 | Soybean | nucleus | 22.43 | 23.23 |
| Bra012972.1-P | Field mustard | nucleus | 56.65 | 22.24 |
| CDY02159 | Canola | extracellular, golgi | 53.61 | 19.37 |
| KRH56866 | Soybean | nucleus | 19.01 | 18.87 |
| Zm00001d015411_P001 | Maize | nucleus | 10.65 | 16.28 |
| OQU75583 | Sorghum | cytosol | 14.45 | 13.57 |
| KXG39897 | Sorghum | cytosol | 16.35 | 13.48 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 15.59 | 13.36 |
| AT1G69325.1 | Thale cress | nucleus | 6.08 | 13.33 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 15.59 | 13.14 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 15.59 | 13.1 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 15.21 | 12.78 |
| Zm00001d028185_P002 | Maize | cytosol | 15.59 | 12.69 |
| Zm00001d048109_P002 | Maize | mitochondrion | 16.73 | 12.29 |
| AT1G13920.4 | Thale cress | nucleus | 17.49 | 12.17 |
| Os03t0211500-01 | Rice | plasma membrane | 14.07 | 11.86 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 13.31 | 11.08 |
| Zm00001d014455_P001 | Maize | nucleus | 14.07 | 10.66 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 14.07 | 10.54 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 13.69 | 10.26 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 13.69 | 10.26 |
| EER90227 | Sorghum | nucleus | 14.45 | 10.16 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 13.31 | 9.97 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 12.93 | 8.61 |
| AT5G61270.1 | Thale cress | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.2 | EntrezGene:836249 | UniProt:A0A178UCZ1 | ProteinID:AED97447.1 | ArrayExpress:AT5G61280 | EnsemblPlantsGene:AT5G61280 |
| RefSeq:AT5G61280 | TAIR:AT5G61280 | RefSeq:AT5G61280-TAIR-G | EnsemblPlants:AT5G61280.1 | TAIR:AT5G61280.1 | ProteinID:BAB08483.1 |
| ncoils:Coil | GO:GO:0008150 | RefSeq:NP_200936.1 | ProteinID:OAO91678.1 | PFAM:PF03763 | PO:PO:0000293 |
| PO:PO:0009005 | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF8 | UniProt:Q9FLK5 | InterPro:Remorin_C | UniParc:UPI000009D0F2 |
| SEG:seg | : | : | : | : | : |
Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLK5]
Coordinates
chr5:-:24643561..24644990
Molecular Weight (calculated)
30793.0 Da
IEP (calculated)
10.563
GRAVY (calculated)
-1.019
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNLVKQRRR RVSISENIKT DLPMLSELDI TDYPALNWLK NQSYWYEKND YYNEKESELA VSVAVAAFVI RSMEEADKQK SKRIREEIKR SRTKKSNLVI
101: PNTQVKRLSK SYTQEVKIGE ESFRKKLLEY PSENRRPQEI GSSSGTSGLA SASSKADSWE KSQIKKIRLR YEKMKADIVG WENERKLAAT LLMEKRKSEL
201: EKRKGINNQH YKSKLARIQL IADGAKKQLE EKRRSKEAQV HGKVKKMSRT GKVPNNYFCF RCY
101: PNTQVKRLSK SYTQEVKIGE ESFRKKLLEY PSENRRPQEI GSSSGTSGLA SASSKADSWE KSQIKKIRLR YEKMKADIVG WENERKLAAT LLMEKRKSEL
201: EKRKGINNQH YKSKLARIQL IADGAKKQLE EKRRSKEAQV HGKVKKMSRT GKVPNNYFCF RCY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.