CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39574
KRH74370
KRH74373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61270.1	KRH39574	AT1G32230.1	19548978
AT5G61270.1	KRH74370	AT1G32230.1	19548978
AT5G61270.1	KRH74373	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54632	Soybean	nucleus	73.01	45.77
KRH03090	Soybean	nucleus	38.04	24.41
VIT_17s0000g06920.t01	Wine grape	nucleus	28.83	20.7
Solyc06g069590.2.1	Tomato	cytosol	24.54	20.41
KRH56866	Soybean	nucleus	28.22	17.36
AT5G61280.1	Thale cress	nucleus	26.99	16.73
Zm00001d015411_P001	Maize	nucleus	15.95	15.12
OQU75583	Sorghum	cytosol	24.54	14.29
KXG39897	Sorghum	cytosol	24.54	12.54
TraesCS4B01G250900.1	Wheat	cytosol	23.31	12.14
TraesCS4A01G053800.2	Wheat	cytosol	22.7	11.86
TraesCS4D01G250800.1	Wheat	nucleus	22.7	11.82
KRH50535	Soybean	nucleus	23.93	11.75
GSMUA_Achr2P19260_001	Banana	nucleus	21.47	11.4
KRH70859	Soybean	nucleus	18.4	11.28
Zm00001d028185_P002	Maize	cytosol	22.09	11.15
Os03t0211500-01	Rice	plasma membrane	20.86	10.9
HORVU4Hr1G068900.21	Barley	cytosol	20.86	10.76
KRG89501	Soybean	nucleus	21.47	10.29
KRH74999	Soybean	nucleus	16.56	10.15
Zm00001d048109_P002	Maize	mitochondrion	20.25	9.22
TraesCS1A01G057900.1	Wheat	nucleus	19.63	9.12
HORVU1Hr1G011610.2	Barley	cytosol	19.63	9.12
TraesCS1B01G075600.1	Wheat	nucleus	19.02	8.83
TraesCS1D01G058700.1	Wheat	nucleus	19.02	8.83
EER90227	Sorghum	nucleus	19.02	8.29
Os10t0325400-01	Rice	cytosol, nucleus	19.02	7.85
Zm00001d014455_P001	Maize	nucleus	15.34	7.2
CDY23073	Canola	nucleus	25.77	6.44
Bra012972.1-P	Field mustard	nucleus	26.38	6.42
CDY02159	Canola	extracellular, golgi	22.09	4.95
AT5G61270.1	Thale cress	nucleus	0.0	0.0

Protein Annotations

EMBL:ACUP02002652	EnsemblPlants:KRH63271	EnsemblPlantsGene:GLYMA_04G164800	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF8	PFAM:PF03763	ProteinID:KRH63271	ProteinID:KRH63271.1	UniParc:UPI0006ED4A7E	UniProt:A0A0R0K941
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:41104671..41105875

Molecular Weight (calculated)

18565.6 Da

IEP (calculated)

10.535

GRAVY (calculated)

-0.633

Length

163 amino acids

Sequence
(BLAST)

001: MERVTAVAAA AFSIHSLEEA GLLNLQKMKE SPKFPRTKTV REKEGKVSRQ PSHGEISTKR SLGQELAMTT ESDFPSKCPS GVSPAAGYQN HKGNQIIQHK
101: NDKASLWEKA KIERIQKRYE KTKSKILAWE SDRKIQAKIQ MDRKKVCISI HGVLFFFIFC KYL

Best Arabidopsis Sequence Match ( AT5G61280.3 )
(BLAST)

001: MDNLVKQRRR RVSISENIKT DLPMLSELDI TDYPALNWLK NQSYWYEKND YYNEKESELA VSVAVAAFVI RSMEEADKQK SKRIREEIKR SRTKKSNLVI
101: PNTQVKRLSK SYTQEVKIGE ESFRKKLLEY PSENRRPQEI GSSSGTSGLA SASSKADSWE KSQIKKIRLR YEKMKADIVG WENERKLAAT LLMEKRKVIS
201: LSSE

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.