Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G057900.1 | Wheat | nucleus | 96.87 | 96.87 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 95.44 | 95.44 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 91.45 | 91.45 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 53.28 | 47.34 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 42.17 | 47.28 |
| Zm00001d014455_P001 | Maize | nucleus | 45.58 | 46.11 |
| EER90227 | Sorghum | nucleus | 47.86 | 44.92 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 9.69 | 31.78 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 9.4 | 30.84 |
| Bra038312.1-P | Field mustard | nucleus | 9.12 | 29.91 |
| CDY44060 | Canola | nucleus | 9.12 | 29.91 |
| KRG89501 | Soybean | nucleus | 27.92 | 28.82 |
| AT1G69325.1 | Thale cress | nucleus | 9.69 | 28.33 |
| KRH50535 | Soybean | nucleus | 26.78 | 28.31 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 23.93 | 27.36 |
| KRH70859 | Soybean | nucleus | 20.51 | 27.07 |
| CDY36418 | Canola | nucleus | 24.5 | 26.63 |
| Bra019698.1-P | Field mustard | nucleus | 23.93 | 25.93 |
| Bra016720.1-P | Field mustard | nucleus | 24.5 | 25.22 |
| CDX96876 | Canola | nucleus | 24.5 | 25.15 |
| CDX98136 | Canola | nucleus | 23.08 | 25.0 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 26.5 | 24.67 |
| CDY34554 | Canola | nucleus | 23.36 | 23.98 |
| KRH74999 | Soybean | nucleus | 17.95 | 23.68 |
| Solyc05g012550.2.1 | Tomato | nucleus | 25.93 | 23.64 |
| Solyc04g005470.2.1 | Tomato | nucleus | 20.23 | 22.54 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 12.82 | 21.63 |
| AT1G13920.4 | Thale cress | nucleus | 23.08 | 21.43 |
| Solyc06g069590.2.1 | Tomato | cytosol | 11.4 | 20.41 |
| KRH63271 | Soybean | cytosol | 8.83 | 19.02 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 10.54 | 16.3 |
| KRH03090 | Soybean | nucleus | 11.4 | 15.75 |
| KRH56866 | Soybean | nucleus | 10.83 | 14.34 |
| KRH54632 | Soybean | nucleus | 10.26 | 13.85 |
| AT5G61280.1 | Thale cress | nucleus | 9.97 | 13.31 |
| CDY23073 | Canola | nucleus | 12.54 | 6.75 |
| Bra012972.1-P | Field mustard | nucleus | 10.54 | 5.52 |
| CDY02159 | Canola | extracellular, golgi | 9.4 | 4.53 |
| AT5G61270.1 | Thale cress | nucleus | 2.28 | 2.19 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G075600.1 | EnsemblPlantsGene:TraesCS1B01G075600 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF8 |
| PFAM:PF03763 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:58544730..58546373
Molecular Weight (calculated)
38940.9 Da
IEP (calculated)
10.412
GRAVY (calculated)
-1.179
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGMRQSRV RFSGVGQEDQ GSGQAMAMPP QRQRGTPFGR GEEYDAAYAA TAAAVAYAIA AMEEEKLPSQ QKPIPEKTAS RQKRVTVHEP TAAPPPRSPP
101: RRGGSMKRPT EGSKISRLFS GNKEIVEVGD EDEQGANVSV RRPVKPAPKK PGDLTPGQNV VGKVVDSVPN LKDDPSFTRK TPDKKRSRNF EQEEANQRAK
201: PGVNPTTSFP GERKQSWKHE QEPANQRAPP AARPPGMVYS SEAERMAAAW EKEKLAKIKE QYNETMETIA EWETEKKAKA RRQKEPKEGD SERKRAKALE
301: EYNDEMKRIS KVAAASRMSA EDKKRNAEGK VWEKAAKIRS TGKLPRSCGC F
101: RRGGSMKRPT EGSKISRLFS GNKEIVEVGD EDEQGANVSV RRPVKPAPKK PGDLTPGQNV VGKVVDSVPN LKDDPSFTRK TPDKKRSRNF EQEEANQRAK
201: PGVNPTTSFP GERKQSWKHE QEPANQRAPP AARPPGMVYS SEAERMAAAW EKEKLAKIKE QYNETMETIA EWETEKKAKA RRQKEPKEGD SERKRAKALE
301: EYNDEMKRIS KVAAASRMSA EDKKRNAEGK VWEKAAKIRS TGKLPRSCGC F
001: MDTLIKQTRR KHPASQEKIR EVGSSTREKK VSARKSVSFK EDKKKPSNWL QKQFSRQMSG QSYDPIGEMD HAAAVAATAY AIATFEETWL ENYHSGLELG
101: PSSSRSKSRS EELLPLEEPR SLSRRFSGQL SFIDSETKDH KPPTLKSPMR KSSSVKKTFS MNLMGDHTKQ NQDSEEKHER QRKPVSEPPR IQPPLRTRSE
201: PRAPPPPPPP LLSPSPLRLP PRETKRQSSE HTSRKDDSTA DAWEKAELSK IKARYEKLNR KIDLWEAKKR EKARRKLDIS EQSELEQRRK RGLQRFREDT
301: EYIEQIAAGA RAQAEKDRQS KEFKVKEKAG VIRSTGKLPG NACCF
101: PSSSRSKSRS EELLPLEEPR SLSRRFSGQL SFIDSETKDH KPPTLKSPMR KSSSVKKTFS MNLMGDHTKQ NQDSEEKHER QRKPVSEPPR IQPPLRTRSE
201: PRAPPPPPPP LLSPSPLRLP PRETKRQSSE HTSRKDDSTA DAWEKAELSK IKARYEKLNR KIDLWEAKKR EKARRKLDIS EQSELEQRRK RGLQRFREDT
301: EYIEQIAAGA RAQAEKDRQS KEFKVKEKAG VIRSTGKLPG NACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.