Factsheet for Solyc04g005470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038312.1-P	Field mustard	nucleus	13.65	40.19
CDY44060	Canola	nucleus	13.65	40.19
Bra004372.1-P	Field mustard	cytosol, mitochondrion, nucleus	13.33	39.25
CDX95945	Canola	cytosol, mitochondrion, nucleus	13.02	38.32
Solyc05g012550.2.1	Tomato	nucleus	41.9	34.29
AT1G69325.1	Thale cress	nucleus	13.02	34.17
KRH74999	Soybean	nucleus	26.67	31.58
KRH70859	Soybean	nucleus	26.35	31.2
Zm00001d015411_P001	Maize	nucleus	14.6	26.74
KRH50535	Soybean	nucleus	27.94	26.51
KRG89501	Soybean	nucleus	27.62	25.59
OQU75583	Sorghum	cytosol	22.22	25.0
VIT_01s0011g00820.t01	Wine grape	nucleus	29.84	24.93
CDY36418	Canola	nucleus	24.76	24.15
GSMUA_Achr2P19260_001	Banana	nucleus	23.49	24.1
CDX98136	Canola	nucleus	24.76	24.07
Bra019698.1-P	Field mustard	nucleus	24.76	24.07
Bra016720.1-P	Field mustard	nucleus	26.03	24.05
CDX96876	Canola	nucleus	25.71	23.68
CDY34554	Canola	nucleus	25.4	23.39
KXG39897	Sorghum	cytosol	23.17	22.88
CDY40911	Canola	endoplasmic reticulum, mitochondrion, plastid	14.92	22.6
TraesCS4A01G053800.2	Wheat	cytosol	21.59	21.79
TraesCS4B01G250900.1	Wheat	cytosol	20.95	21.09
TraesCS1A01G057900.1	Wheat	nucleus	23.49	21.08
TraesCS1D01G058700.1	Wheat	nucleus	23.49	21.08
TraesCS4D01G250800.1	Wheat	nucleus	20.63	20.77
HORVU1Hr1G011610.2	Barley	cytosol	22.86	20.51
Zm00001d028185_P002	Maize	cytosol	20.95	20.43
TraesCS1B01G075600.1	Wheat	nucleus	22.54	20.23
Os03t0211500-01	Rice	plasma membrane	19.68	19.87
Zm00001d048109_P002	Maize	mitochondrion	22.54	19.83
AT1G13920.4	Thale cress	nucleus	23.17	19.31
HORVU4Hr1G068900.21	Barley	cytosol	18.41	18.35
EER90227	Sorghum	nucleus	20.95	17.65
Zm00001d014455_P001	Maize	nucleus	19.05	17.29
Os10t0325400-01	Rice	cytosol, nucleus	21.59	17.22
Solyc06g069590.2.1	Tomato	cytosol	8.89	14.29

Protein Annotations

EnsemblPlants:Solyc04g005470.2.1	EnsemblPlantsGene:Solyc04g005470.2	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF5
PFAM:PF03763	SEG:seg	UniParc:UPI00027661D6	UniProt:K4BNF3	MapMan:35.2	:

Description

No Description!

Coordinates

chr4:+:321164..322741

Molecular Weight (calculated)

36091.1 Da

IEP (calculated)

10.530

GRAVY (calculated)

-0.944

Length

315 amino acids

Sequence
(BLAST)

001: MNSRDRGIPA QRTQMSKETK RTVSWLERQF TTKASRDYDS SNSVDYPTAV AVAAFVVKSI EDKSNKDQTK TNIGADKPLS NIKSKANDII ERPEKSTAVK
101: AAKSSSKVAD KNVVIRTATL NQEPLNSTRS LKQSATFEDN RKNSTFKNID IASAKTPIRL SMSQKEMTKG TTTTTNHVVV NSKANIWENE EMKKIKERYE
201: VVLNFCMIEI GKHKLLSSNY KEIFRYEKQH YVILDWETKK KKKSKRHLEQ IEAKLDRRRA MTKQSFYNDI ERIEKIAGGA KAKAEQNQEK EEHKVKERAN
301: KIRSTGKMPA TCLCF

Best Arabidopsis Sequence Match ( AT1G13920.4 )
(BLAST)

001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF

Arabidopsis Description

Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.