Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | EER90487 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | KXG38822 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU75583 | Sorghum | cytosol | 87.77 | 100.0 |
| Zm00001d028185_P002 | Maize | cytosol | 87.77 | 86.69 |
| Zm00001d015411_P001 | Maize | nucleus | 46.08 | 85.47 |
| Zm00001d048109_P002 | Maize | mitochondrion | 86.83 | 77.37 |
| Os03t0211500-01 | Rice | plasma membrane | 67.71 | 69.23 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 66.77 | 68.05 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 66.46 | 67.95 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 64.89 | 66.13 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 57.99 | 58.54 |
| EER90227 | Sorghum | nucleus | 43.26 | 36.9 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 11.6 | 34.58 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 11.6 | 34.58 |
| AT1G69325.1 | Thale cress | nucleus | 12.23 | 32.5 |
| CDY44060 | Canola | nucleus | 10.66 | 31.78 |
| Bra038312.1-P | Field mustard | nucleus | 10.66 | 31.78 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 29.78 | 30.94 |
| KRH50535 | Soybean | nucleus | 31.03 | 29.82 |
| KRH70859 | Soybean | nucleus | 24.45 | 29.32 |
| KRH74999 | Soybean | nucleus | 23.2 | 27.82 |
| KRG89501 | Soybean | nucleus | 29.47 | 27.65 |
| Bra019698.1-P | Field mustard | nucleus | 25.71 | 25.31 |
| Solyc05g012550.2.1 | Tomato | nucleus | 30.41 | 25.19 |
| CDY36418 | Canola | nucleus | 25.39 | 25.08 |
| CDX98136 | Canola | nucleus | 25.39 | 25.0 |
| KRH63271 | Soybean | cytosol | 12.54 | 24.54 |
| Bra016720.1-P | Field mustard | nucleus | 25.71 | 24.05 |
| CDY34554 | Canola | nucleus | 25.39 | 23.68 |
| CDX96876 | Canola | nucleus | 25.39 | 23.68 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 27.59 | 23.34 |
| Solyc04g005470.2.1 | Tomato | nucleus | 22.88 | 23.17 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 15.05 | 23.08 |
| AT1G13920.4 | Thale cress | nucleus | 24.14 | 20.37 |
| Solyc06g069590.2.1 | Tomato | cytosol | 11.91 | 19.39 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 12.54 | 17.62 |
| AT5G61280.1 | Thale cress | nucleus | 13.48 | 16.35 |
| KRH54632 | Soybean | nucleus | 12.54 | 15.38 |
| KRH03090 | Soybean | nucleus | 12.23 | 15.35 |
| KRH56866 | Soybean | nucleus | 10.97 | 13.21 |
| CDY23073 | Canola | nucleus | 16.3 | 7.98 |
| Bra012972.1-P | Field mustard | nucleus | 14.11 | 6.72 |
| CDY02159 | Canola | extracellular, golgi | 12.85 | 5.63 |
| AT5G61270.1 | Thale cress | nucleus | 2.19 | 1.91 |
Protein Annotations
| EnsemblPlants:KXG39897 | EnsemblPlantsGene:SORBI_3001G460300 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF38 |
| PFAM:PF03763 | ProteinID:KXG39897 | ProteinID:KXG39897.1 | SEG:seg | UniParc:UPI00081ABABC | UniProt:A0A1B6QPQ7 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:73569424..73572407
Molecular Weight (calculated)
34932.4 Da
IEP (calculated)
10.450
GRAVY (calculated)
-1.018
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDSKKLRV RFPGVAKGGR GGRQGSAIPP QESTPIGREM NSSGEYDAAF AATIAAAAFA IAAREEKLAT QKKTVPIEEV PPALSPAKRG ESTKKPAGAN
101: KIARWFSGKE PLEHDDDGPV NVSVRRPLKP APGKPEDMPA DHKVAPKMLE TSLSVKKGSG SSSKSADRKG SKKFEQEQAV QKAPSAVRPA TSYHSRRNGE
201: DAAGVTAIGG TGSKADEWEK AKLARVREEY EKMMETIAEW ETEKKVKARR QKEQKETELD RKRAKALEEY NQEMTRINKI AGGARSMAEE RKYNDENKIK
301: EKARKIRSTG KPPRTCACF
101: KIARWFSGKE PLEHDDDGPV NVSVRRPLKP APGKPEDMPA DHKVAPKMLE TSLSVKKGSG SSSKSADRKG SKKFEQEQAV QKAPSAVRPA TSYHSRRNGE
201: DAAGVTAIGG TGSKADEWEK AKLARVREEY EKMMETIAEW ETEKKVKARR QKEQKETELD RKRAKALEEY NQEMTRINKI AGGARSMAEE RKYNDENKIK
301: EKARKIRSTG KPPRTCACF
001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.