Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | EER90487 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | KXG38822 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39897 | Sorghum | cytosol | 100.0 | 87.77 |
| Zm00001d015411_P001 | Maize | nucleus | 52.5 | 85.47 |
| Zm00001d028185_P002 | Maize | cytosol | 87.5 | 75.85 |
| Zm00001d048109_P002 | Maize | mitochondrion | 87.5 | 68.44 |
| Os03t0211500-01 | Rice | plasma membrane | 68.93 | 61.86 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 68.57 | 61.34 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 68.21 | 61.22 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 66.43 | 59.42 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 62.5 | 55.38 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 13.21 | 34.58 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 13.21 | 34.58 |
| EER90227 | Sorghum | nucleus | 43.57 | 32.62 |
| AT1G69325.1 | Thale cress | nucleus | 13.93 | 32.5 |
| CDY44060 | Canola | nucleus | 12.14 | 31.78 |
| Bra038312.1-P | Field mustard | nucleus | 12.14 | 31.78 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 33.57 | 30.62 |
| KRH70859 | Soybean | nucleus | 27.14 | 28.57 |
| KRH50535 | Soybean | nucleus | 32.5 | 27.41 |
| KRH74999 | Soybean | nucleus | 25.36 | 26.69 |
| KRG89501 | Soybean | nucleus | 31.43 | 25.88 |
| KRH63271 | Soybean | cytosol | 14.29 | 24.54 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 17.14 | 23.08 |
| Solyc05g012550.2.1 | Tomato | nucleus | 30.71 | 22.34 |
| CDY36418 | Canola | nucleus | 25.71 | 22.29 |
| Bra019698.1-P | Field mustard | nucleus | 25.71 | 22.22 |
| Solyc04g005470.2.1 | Tomato | nucleus | 25.0 | 22.22 |
| CDX98136 | Canola | nucleus | 25.36 | 21.91 |
| Bra016720.1-P | Field mustard | nucleus | 26.07 | 21.41 |
| CDY34554 | Canola | nucleus | 25.71 | 21.05 |
| CDX96876 | Canola | nucleus | 25.71 | 21.05 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 27.86 | 20.69 |
| Solyc06g069590.2.1 | Tomato | cytosol | 13.57 | 19.39 |
| AT1G13920.4 | Thale cress | nucleus | 25.0 | 18.52 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 14.29 | 17.62 |
| KRH54632 | Soybean | nucleus | 13.93 | 15.0 |
| AT5G61280.1 | Thale cress | nucleus | 13.57 | 14.45 |
| KRH03090 | Soybean | nucleus | 11.07 | 12.2 |
| KRH56866 | Soybean | nucleus | 9.64 | 10.19 |
| CDY23073 | Canola | nucleus | 16.79 | 7.21 |
| Bra012972.1-P | Field mustard | nucleus | 15.36 | 6.42 |
| CDY02159 | Canola | extracellular, golgi | 12.86 | 4.95 |
| AT5G61270.1 | Thale cress | nucleus | 2.5 | 1.91 |
Protein Annotations
| EnsemblPlants:OQU75583 | EnsemblPlantsGene:SORBI_3K026400 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF38 |
| PFAM:PF03763 | ProteinID:EES20438.1 | ProteinID:KXG18648.1 | ProteinID:OQU75583 | ProteinID:OQU75583.1 | ProteinID:OQU93023.1 |
| RefSeq:XP_002488883.1 | SEG:seg | UniParc:UPI0001AFF6C5 | UniProt:C6JST0 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chrsuper_2600:+:18..2362
Molecular Weight (calculated)
30856.5 Da
IEP (calculated)
10.298
GRAVY (calculated)
-1.023
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSSGEYDAA FAATIAAAAF AIAAREEKLA TQKKTVPIEE VPPALSPAKR GESTKKPAGA NKIARWFSGK EPLEHDDDGP VNVSVRRPLK PAPGKPEDMP
101: ADHKVAPKML ETSLSVKKGS GSSSKSADRK GSKKFEQEQA VQKAPSAVRP ATSYHSRRNG EDAAGVTAIG GTGSKADEWE KAKLARVREE YEKMMETIAE
201: WETEKKVKAR RQKEQKETEL DRKRAKALEE YNQEMTRINK IAGGARSMAE ERKYNDENKI KEKARKIRST GKPPRTCACF
101: ADHKVAPKML ETSLSVKKGS GSSSKSADRK GSKKFEQEQA VQKAPSAVRP ATSYHSRRNG EDAAGVTAIG GTGSKADEWE KAKLARVREE YEKMMETIAE
201: WETEKKVKAR RQKEQKETEL DRKRAKALEE YNQEMTRINK IAGGARSMAE ERKYNDENKI KEKARKIRST GKPPRTCACF
001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.