Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46970.1 | KRH03510 | AT5G61380.1 | 11828029 |
| AT2G46970.1 | KRH54582 | AT5G61380.1 | 11828029 |
| AT2G46970.1 | KRH56889 | AT5G61380.1 | 11828029 |
| AT2G46970.1 | KRH63298 | AT5G61380.1 | 11828029 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH68348 | Soybean | nucleus | 85.91 | 86.07 |
| KRH33663 | Soybean | nucleus | 42.08 | 48.55 |
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 16.02 | 46.11 |
| KRH71636 | Soybean | golgi, plasma membrane, vacuole | 10.23 | 34.64 |
| KRH04711 | Soybean | plastid | 10.04 | 32.5 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 11.2 | 29.0 |
| KRH72281 | Soybean | nucleus, plastid | 5.98 | 24.8 |
| KRH04595 | Soybean | nucleus | 12.93 | 24.63 |
| AT2G46970.1 | Thale cress | nucleus | 18.15 | 22.6 |
| CDX67873 | Canola | nucleus | 13.13 | 22.15 |
| Bra003483.1-P | Field mustard | nucleus | 12.93 | 21.82 |
| CDX80064 | Canola | nucleus | 16.8 | 21.75 |
| Bra004489.1-P | Field mustard | nucleus | 16.8 | 21.75 |
| KRH55381 | Soybean | cytosol | 2.9 | 21.74 |
| CDY66254 | Canola | nucleus | 16.6 | 21.5 |
| CDY65446 | Canola | nucleus | 13.71 | 21.45 |
| AT3G62090.2 | Thale cress | nucleus | 14.67 | 20.94 |
| KRH05665 | Soybean | nucleus | 11.97 | 20.88 |
| KRH76132 | Soybean | nucleus | 7.34 | 20.77 |
| KRH28453 | Soybean | nucleus | 11.58 | 20.62 |
| KRH71345 | Soybean | nucleus | 6.95 | 20.34 |
| KRH67519 | Soybean | nucleus | 19.69 | 20.32 |
| CDX83349 | Canola | nucleus | 15.83 | 20.3 |
| Bra000436.1-P | Field mustard | nucleus | 15.83 | 20.3 |
| KRH15381 | Soybean | nucleus | 11.58 | 20.2 |
| KRH45975 | Soybean | nucleus | 20.46 | 20.19 |
| KRH77016 | Soybean | nucleus | 14.48 | 20.0 |
| KRH33733 | Soybean | nucleus | 26.64 | 19.97 |
| CDY11401 | Canola | extracellular | 13.32 | 19.6 |
| CDY50911 | Canola | nucleus | 10.23 | 19.56 |
| CDX76616 | Canola | extracellular | 13.51 | 19.55 |
| KRH19683 | Soybean | nucleus | 18.92 | 19.25 |
| Os05t0139100-01 | Rice | nucleus | 18.73 | 19.21 |
| KRG99030 | Soybean | nucleus | 20.27 | 19.2 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 18.53 | 19.12 |
| KRH68390 | Soybean | nucleus | 22.97 | 19.07 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 21.81 | 19.06 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 18.34 | 18.92 |
| KRG90443 | Soybean | nucleus | 26.25 | 18.84 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 18.34 | 18.74 |
| KRH32290 | Soybean | nucleus | 17.76 | 18.74 |
| KRH14535 | Soybean | nucleus | 20.27 | 18.68 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 17.76 | 18.66 |
| KRG96663 | Soybean | nucleus | 22.78 | 18.64 |
| Zm00001d024783_P001 | Maize | nucleus | 18.15 | 18.61 |
| Zm00001d040536_P005 | Maize | nucleus | 19.88 | 18.17 |
| KRH05051 | Soybean | nucleus | 13.71 | 17.75 |
| KRH73584 | Soybean | nucleus | 19.11 | 17.62 |
| KXG32305 | Sorghum | nucleus | 20.46 | 17.55 |
| PGSC0003DMT400047079 | Potato | nucleus | 22.97 | 16.81 |
| Os01t0286100-01 | Rice | nucleus | 20.46 | 16.64 |
| Solyc01g102300.2.1 | Tomato | nucleus | 22.39 | 16.22 |
| KRH54630 | Soybean | nucleus | 12.55 | 16.17 |
| Zm00001d008205_P001 | Maize | nucleus | 19.88 | 16.14 |
| Bra007660.1-P | Field mustard | nucleus | 12.93 | 15.88 |
| KRH32094 | Soybean | nucleus | 8.49 | 15.55 |
| KRH67287 | Soybean | nucleus | 8.69 | 15.41 |
| KRG95612 | Soybean | nucleus | 8.69 | 15.41 |
| KRH03075 | Soybean | nucleus | 10.42 | 14.71 |
| KXG21255 | Sorghum | nucleus | 19.5 | 14.68 |
| KRH34087 | Soybean | nucleus | 9.27 | 14.63 |
| KRG88937 | Soybean | nucleus | 12.74 | 14.19 |
| KRH75301 | Soybean | nucleus | 12.55 | 14.19 |
| KRG92679 | Soybean | nucleus | 9.07 | 14.16 |
| KRH12909 | Soybean | nucleus | 12.16 | 13.26 |
| KRH65412 | Soybean | nucleus | 9.85 | 12.85 |
| KRH37912 | Soybean | nucleus | 11.78 | 12.45 |
| KRH71344 | Soybean | cytosol | 0.77 | 5.33 |
Protein Annotations
| EntrezGene:100784724 | MapMan:15.5.32 | Gene3D:4.10.280.10 | EMBL:ACUP02012159 | EnsemblPlantsGene:GLYMA_19G222000 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | UniProt:I1NBJ2 | InterPro:IPR011598 |
| InterPro:IPR036638 | EnsemblPlants:KRG96615 | ProteinID:KRG96615 | ProteinID:KRG96615.1 | EMBL:KT031129 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF284 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000233E741 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr19:+:47396497..47399439
Molecular Weight (calculated)
57386.4 Da
IEP (calculated)
8.896
GRAVY (calculated)
-0.768
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MMIQKMFDST RSGMTRSSSH VASINDNDFL ELVWENGEIV VRGGSSSNRS RKTNEERIHE DASINKRTRL NPLYSLEDHF LPQRDSDMSS SHQSNNGQDS
101: CQSSQSKNSC KLHEEFANLL KPVTTGNSHL QQCLPSSPLK KQRTDSTQTP RPAKVNFSNF SIPAVFLKST TTTTTNNYQG NSATQQTKNH SSPARVEEIE
201: ALKVDKSAKE TQCFQKQTSL TVERSTKLPT PAVDEHSEAA GHNCGVLGIH RSQGQTSTSE ALRAKAKAYN NNNINMCHEP LLASSSVCSL GASNDPNLGF
301: RKHEDTDDST YLSDNDGEPE DMVKQDREGN RVKRSRNPEV HNLSEKKRRE KINKKMRTLK DLIPNCNKVD KASMLDDAID YLKTLKLQLQ ANFQIMSMGS
401: GLWPLMMGFR PPQLPIPPLS AITDNRLIQM FGSPNQIPPM PMPHAPFFPI IGNSATQSHL ANNTTTTAAA TTNLAEHLAN SLHGNATKLA PPSQISFQHH
501: HTSTSTPTLA TPFIFPQK
101: CQSSQSKNSC KLHEEFANLL KPVTTGNSHL QQCLPSSPLK KQRTDSTQTP RPAKVNFSNF SIPAVFLKST TTTTTNNYQG NSATQQTKNH SSPARVEEIE
201: ALKVDKSAKE TQCFQKQTSL TVERSTKLPT PAVDEHSEAA GHNCGVLGIH RSQGQTSTSE ALRAKAKAYN NNNINMCHEP LLASSSVCSL GASNDPNLGF
301: RKHEDTDDST YLSDNDGEPE DMVKQDREGN RVKRSRNPEV HNLSEKKRRE KINKKMRTLK DLIPNCNKVD KASMLDDAID YLKTLKLQLQ ANFQIMSMGS
401: GLWPLMMGFR PPQLPIPPLS AITDNRLIQM FGSPNQIPPM PMPHAPFFPI IGNSATQSHL ANNTTTTAAA TTNLAEHLAN SLHGNATKLA PPSQISFQHH
501: HTSTSTPTLA TPFIFPQK
001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
Arabidopsis Description
PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.