Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67873 | Canola | nucleus | 98.7 | 98.7 |
| CDY65446 | Canola | nucleus | 96.09 | 89.12 |
| AT3G62090.2 | Thale cress | nucleus | 71.99 | 60.88 |
| Bra007660.1-P | Field mustard | nucleus | 71.01 | 51.66 |
| Bra004489.1-P | Field mustard | nucleus | 48.86 | 37.5 |
| Bra000436.1-P | Field mustard | nucleus | 46.25 | 35.15 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 16.61 | 25.5 |
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 13.68 | 23.33 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 13.68 | 19.63 |
| Bra037312.1-P | Field mustard | nucleus | 12.7 | 18.66 |
| Bra011237.1-P | Field mustard | plastid | 12.05 | 17.13 |
| Bra010591.1-P | Field mustard | nucleus, plastid | 18.89 | 17.01 |
| Bra011740.1-P | Field mustard | nucleus, plastid | 19.54 | 16.95 |
| KRH33663 | Soybean | nucleus | 24.43 | 16.7 |
| Bra007430.1-P | Field mustard | nucleus | 22.48 | 16.2 |
| Bra000283.1-P | Field mustard | nucleus | 21.17 | 15.74 |
| Bra037742.1-P | Field mustard | nucleus | 20.2 | 15.27 |
| Bra000560.1-P | Field mustard | nucleus | 19.22 | 15.21 |
| Os05t0139100-01 | Rice | nucleus | 22.8 | 13.86 |
| Bra036256.1-P | Field mustard | nucleus | 10.1 | 13.6 |
| Bra020398.1-P | Field mustard | nucleus | 12.38 | 13.57 |
| Bra020017.1-P | Field mustard | nucleus | 21.82 | 13.56 |
| Zm00001d024783_P001 | Maize | nucleus | 22.15 | 13.47 |
| KRH68348 | Soybean | nucleus | 22.48 | 13.35 |
| Bra031668.1-P | Field mustard | nucleus | 20.85 | 13.01 |
| KRG96615 | Soybean | nucleus | 21.82 | 12.93 |
| Bra002679.1-P | Field mustard | nucleus | 12.05 | 12.8 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 20.85 | 12.75 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 20.85 | 12.75 |
| Bra006788.1-P | Field mustard | nucleus | 12.38 | 12.67 |
| Bra032111.1-P | Field mustard | nucleus | 14.33 | 12.64 |
| Bra018539.1-P | Field mustard | nucleus | 10.42 | 12.6 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 20.2 | 12.58 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 20.52 | 12.43 |
| Zm00001d040536_P005 | Maize | nucleus | 22.48 | 12.17 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 23.45 | 12.14 |
| Bra007863.1-P | Field mustard | nucleus | 13.36 | 12.13 |
| KXG32305 | Sorghum | nucleus | 23.13 | 11.76 |
| PGSC0003DMT400047079 | Potato | nucleus | 26.38 | 11.44 |
| Os01t0286100-01 | Rice | nucleus | 23.13 | 11.15 |
| Zm00001d008205_P001 | Maize | nucleus | 23.13 | 11.13 |
| Solyc01g102300.2.1 | Tomato | nucleus | 25.08 | 10.77 |
| Bra033368.1-P | Field mustard | nucleus | 10.75 | 10.61 |
| Bra000872.1-P | Field mustard | nucleus | 10.42 | 10.36 |
| KXG21255 | Sorghum | nucleus | 22.48 | 10.03 |
| Bra011061.1-P | Field mustard | nucleus | 16.61 | 9.86 |
| Bra011062.1-P | Field mustard | cytosol | 11.07 | 7.42 |
Protein Annotations
| EnsemblPlants:Bra003483.1 | EnsemblPlants:Bra003483.1-P | EnsemblPlantsGene:Bra003483 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00025418D7 | UniProt:M4CH00 | MapMan:15.5.32 | : |
Description
AT3G62090 (E=2e-079) PIL2, PIF6 | PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2); protein binding / transcription factor
Coordinates
chrA07:-:13424745..13426102
Molecular Weight (calculated)
34315.4 Da
IEP (calculated)
5.083
GRAVY (calculated)
-0.713
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MELVFENGQF LAKSQRSKAF SLENQRTKSI VDLYEDEYNE DFMKSIIHGA DKKLQSLKAS SSKKMVVDYE NRKDNEFIPP DEQSVVAERS VELGFDSTEF
101: TEDSEGSTYL SSSLDDESDD PRPRVPARTR KSLVKRRRSN SNELYNSSEK NQRSDINKKM RKLQNLLPNS GKDDNESTLD EAINYMTTLQ LQVQMMTMSN
201: RFAAPAMMLP LGPHYSQMGL PTCMQMGLPQ FLPPPVLGSG GNSADMLRFL NHPTGLITPM QNSALFTPMG NYFPPSCAAF PNQIQNSTSL SNLDDATTDG
301: GSLSGKK
101: TEDSEGSTYL SSSLDDESDD PRPRVPARTR KSLVKRRRSN SNELYNSSEK NQRSDINKKM RKLQNLLPNS GKDDNESTLD EAINYMTTLQ LQVQMMTMSN
201: RFAAPAMMLP LGPHYSQMGL PTCMQMGLPQ FLPPPVLGSG GNSADMLRFL NHPTGLITPM QNSALFTPMG NYFPPSCAAF PNQIQNSTSL SNLDDATTDG
301: GSLSGKK
001: MELVFENGQI LAKGQRSNVS LHNQRTKSIM DLYEAEYNED FMKSIIHGGG GAITNLGDTQ VVPQSHVAAA HETNMLESNK HVDDSETLKA SSSKRMMVDY
101: HNRKKIKFIP PDEQSVVADR SFKLGFDTSS VGFTEDSEGS MYLSSSLDDE SDDARPQVPA RTRKALVKRK RNAEAYNSPE RNQRNDINKK MRTLQNLLPN
201: SHKDDNESML DEAINYMTNL QLQVQMMTMG NRFVTPSMMM PLGPNYSQMG LAMGVGMQMG EQQFLPAHVL GAGLPGINDS ADMLRFLNHP GLMPMQNSAP
301: FIPTENCSPQ SVPPSCAAFP NQIPNPNSLS NLDGATLHKK SRKTNR
101: HNRKKIKFIP PDEQSVVADR SFKLGFDTSS VGFTEDSEGS MYLSSSLDDE SDDARPQVPA RTRKALVKRK RNAEAYNSPE RNQRNDINKK MRTLQNLLPN
201: SHKDDNESML DEAINYMTNL QLQVQMMTMG NRFVTPSMMM PLGPNYSQMG LAMGVGMQMG EQQFLPAHVL GAGLPGINDS ADMLRFLNHP GLMPMQNSAP
301: FIPTENCSPQ SVPPSCAAFP NQIPNPNSLS NLDGATLHKK SRKTNR
Arabidopsis Description
PIF6PIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VFI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.