Factsheet for Bra007430.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06026	Canola	nucleus	99.3	95.7
CDX71916	Canola	nucleus	96.24	92.55
AT3G59060.2	Thale cress	nucleus	80.28	77.03
Bra037742.1-P	Field mustard	nucleus	56.57	59.36
Bra000283.1-P	Field mustard	nucleus	57.04	58.84
Os03t0782500-01	Rice	nucleus	32.39	33.66
TraesCS2B01G273500.1	Wheat	nucleus	28.17	33.52
TraesCS2A01G253900.2	Wheat	nucleus	27.93	33.24
HORVU2Hr1G060680.1	Barley	nucleus	27.93	32.87
HORVU5Hr1G102240.3	Barley	nucleus	29.81	32.07
KRH45975	Soybean	nucleus	39.44	32.0
Solyc07g043580.2.1	Tomato	nucleus	36.85	31.72
Zm00001d034298_P001	Maize	nucleus	31.22	31.52
TraesCS5B01G422000.1	Wheat	nucleus	29.58	30.73
TraesCS5D01G428400.2	Wheat	nucleus	29.58	30.14
VIT_12s0028g01110.t01	Wine grape	nucleus	39.44	30.11
KRG99030	Soybean	nucleus	38.5	29.98
PGSC0003DMT400041156	Potato	nucleus	36.38	29.98
Zm00001d013130_P001	Maize	nucleus	26.06	28.68
KRH73584	Soybean	nucleus	37.56	28.47
KRH14535	Soybean	nucleus	37.32	28.29
TraesCS2D01G254400.3	Wheat	nucleus	28.4	28.14
TraesCS5A01G420200.1	Wheat	nucleus	27.7	28.1
OQU88421	Sorghum	nucleus	27.23	28.09
Os07t0143200-01	Rice	nucleus	27.23	28.02
Bra012133.1-P	Field mustard	nucleus, plastid	11.5	22.9
Bra037312.1-P	Field mustard	nucleus	11.03	22.49
Bra003483.1-P	Field mustard	nucleus	16.2	22.48
Bra011237.1-P	Field mustard	plastid	11.03	21.76
Bra004489.1-P	Field mustard	nucleus	18.54	19.75
Bra031668.1-P	Field mustard	nucleus	22.77	19.72
Bra010591.1-P	Field mustard	nucleus, plastid	15.73	19.65
Bra020017.1-P	Field mustard	nucleus	21.83	18.83
Bra000560.1-P	Field mustard	nucleus	17.14	18.81
Bra011740.1-P	Field mustard	nucleus, plastid	15.49	18.64
Bra000436.1-P	Field mustard	nucleus	17.14	18.07
KXG37432	Sorghum	plastid	20.42	18.05
Bra036256.1-P	Field mustard	nucleus	9.62	17.98
Bra020398.1-P	Field mustard	nucleus	11.27	17.14
Bra002679.1-P	Field mustard	nucleus	11.27	16.61
Bra018539.1-P	Field mustard	nucleus	9.86	16.54
Bra011061.1-P	Field mustard	nucleus	19.95	16.44
Bra006788.1-P	Field mustard	nucleus	11.27	16.0
Bra032111.1-P	Field mustard	nucleus	12.68	15.52
Bra011062.1-P	Field mustard	cytosol	15.96	14.85
Bra007863.1-P	Field mustard	nucleus	11.74	14.79
Bra000872.1-P	Field mustard	nucleus	10.56	14.56
Bra033368.1-P	Field mustard	nucleus	10.56	14.47
Bra007660.1-P	Field mustard	nucleus	14.08	14.22

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra007430	EnsemblPlants:Bra007430.1	EnsemblPlants:Bra007430.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009693	GO:GO:0009719
GO:GO:0009987	GO:GO:0010244	GO:GO:0010600	GO:GO:0010928	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4CT87	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF194	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002542E5C	InterPro:bHLH_dom	SEG:seg

Description

AT3G59060 (E=1e-141) PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor

Coordinates

chrA09:-:29164353..29166073

Molecular Weight (calculated)

47732.4 Da

IEP (calculated)

8.347

GRAVY (calculated)

-0.823

Length

426 amino acids

Sequence
(BLAST)

001: MSSNKRSVRY DELVELLWRD GQVVLQSQVR REPSVQVQTH KHDQALRKPN NTYLENQETI RKHNENVQGD QETVSWIQYP PEDVVDPFES EFSSHFFSSV
101: DHLDGPNHPK KPLTIKEAAK PEAKAMAPPK FWPPVVSVGP SHCGSNQSTN DHQVTHPPVS MSDRSKNVEE RLDTSSGGSS GCSKETESGR SVSISRKRKH
201: AMDTDQESMS QSDVRLMPTD DQTMGNKSSQ RSGSTRRSRA AEVHNLSERR RRDRINERMK ALQELIPHCS KTDKASILDE AIDYLKTLQM QLQVMWMGSG
301: MAAAAAAAAT PMMFPGVQSS QYINQMAMQS QMQMPQFPVM NRPAAQNHPG LVCQNPAVQF QMQAQNQMLS EQLARYMGGF PPMPATTQTQ TVQQPMDMMR
401: FGSQVGQQSQ LSTPVTTDSL RMGKTG

Best Arabidopsis Sequence Match ( AT3G59060.1 )
(BLAST)

001: MEQVFADWNF EDNFHMSTNK RSIRPEDELV ELLWRDGQVV LQSQARREPS VQVQTHKQET LRKPNNIFLD NQETVQKPNY AALDDQETVS WIQYPPDDVI
101: DPFESEFSSH FFSSIDHLGG PEKPRTIEET VKHEAQAMAP PKFRSSVITV GPSHCGSNQS TNIHQATTLP VSMSDRSKNV EERLDTSSGG SSGCSYGRNN
201: KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID
301: YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ LSQFPVMNRS APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP
401: PAGNQTVQQQ PADMLGFGSP AGPQSQLSAP ATTDSLHMGK IG

Arabidopsis Description

PIF5Transcription factor PIF5 [Source:UniProtKB/Swiss-Prot;Acc:Q84LH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.