Factsheet for Bra011237.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28232	Canola	nucleus	99.54	65.75
CDX68710	Canola	nucleus	93.98	62.08
AT4G30980.2	Thale cress	nucleus, plastid	76.39	46.09
Bra020398.1-P	Field mustard	nucleus	54.17	41.79
Bra036256.1-P	Field mustard	nucleus	43.98	41.67
Bra007863.1-P	Field mustard	nucleus	64.81	41.42
Bra032111.1-P	Field mustard	nucleus	66.2	41.09
Bra002679.1-P	Field mustard	nucleus	53.24	39.79
Bra006788.1-P	Field mustard	nucleus	52.78	38.0
Bra018539.1-P	Field mustard	nucleus	42.13	35.83
Bra000872.1-P	Field mustard	nucleus	43.98	30.74
Bra033368.1-P	Field mustard	nucleus	42.59	29.58
Bra037312.1-P	Field mustard	nucleus	19.44	20.1
Bra012133.1-P	Field mustard	nucleus, plastid	17.59	17.76
Bra010591.1-P	Field mustard	nucleus, plastid	23.15	14.66
Bra011740.1-P	Field mustard	nucleus, plastid	21.76	13.28
Bra000560.1-P	Field mustard	nucleus	22.22	12.37
Bra000283.1-P	Field mustard	nucleus	23.61	12.35
Bra003483.1-P	Field mustard	nucleus	17.13	12.05
Bra037742.1-P	Field mustard	nucleus	21.76	11.58
Bra000436.1-P	Field mustard	nucleus	21.3	11.39
Bra007430.1-P	Field mustard	nucleus	21.76	11.03
Bra004489.1-P	Field mustard	nucleus	19.91	10.75
Bra031668.1-P	Field mustard	nucleus	23.61	10.37
Bra020017.1-P	Field mustard	nucleus	23.15	10.12
Bra007660.1-P	Field mustard	nucleus	15.74	8.06
Bra011062.1-P	Field mustard	cytosol	14.81	6.99
Bra011061.1-P	Field mustard	nucleus	16.67	6.96

Protein Annotations

EnsemblPlants:Bra011237.1	EnsemblPlants:Bra011237.1-P	EnsemblPlantsGene:Bra011237	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002546BB5	UniProt:M4D433	MapMan:15.5.32	:	:

Description

AT4G30980 (E=2e-076) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA01:+:3138951..3140882

Molecular Weight (calculated)

22826.3 Da

IEP (calculated)

10.024

GRAVY (calculated)

-0.409

Length

216 amino acids

Sequence
(BLAST)

001: MKQSHTQTQS QATASTTTGG TAATPQTKPK VRARRGQATD PHSIAERLRR ERIAERMKSL QELVPNGNKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG
101: AASVSSQISE DAGGSNENTS GENQTAAKMT EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATTISTATC PSRNPLISAV KEAGVPLSPN AATTPLVNVK
201: GASVVTVKDA SSVSKP

Best Arabidopsis Sequence Match ( AT4G30980.2 )
(BLAST)

001: MSKSNPSNLK YYNLHPSFKH HKALNLKRHF NNIHFHSHSP PKKKKTEAMN SSSLLTPSSS PSPHLQSPAT FDHDDFLHHI FSSTPWPSSV LDDTPPPTSD
101: CAPVTGFHHH DADSRNQITM IPLSHNHPND ALFNGFSTGS LPFHLPQGSG GQTQTQSQAT ASATTGGATA QPQTKPKVRA RRGQATDPHS IAERLRRERI
201: AERMKSLQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAS ASSQISEDAG GSHENTSSSG EAKMTEHQVA KLMEEDMGSA MQYLQGKGLC
301: LMPISLATTI STATCPSRSP FVKDTGVPLS PNLSTTIVAN GNGSSLVTVK DAPSVSKP

Arabidopsis Description

LRL2LJRHL1-like 2 [Source:TAIR;Acc:AT4G30980]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.