Factsheet for Bra011062.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06867	Canola	nucleus	63.54	60.37
Bra011061.1-P	Field mustard	nucleus	51.53	45.65
CDY35222	Canola	nucleus	56.99	45.23
AT4G28800.2	Thale cress	nucleus	39.08	39.17
AT4G28811.1	Thale cress	nucleus	43.67	36.76
AT4G28815.1	Thale cress	vacuole	23.36	34.85
AT4G28790.1	Thale cress	nucleus	30.13	33.41
Bra012133.1-P	Field mustard	nucleus, plastid	9.83	21.03
TraesCS2D01G461900.1	Wheat	nucleus	6.77	19.75
Bra037742.1-P	Field mustard	nucleus	16.59	18.72
Os04t0618600-01	Rice	nucleus	7.21	18.23
EES11436	Sorghum	nucleus	7.21	17.55
Zm00001d002288_P002	Maize	nucleus	8.08	17.29
Bra000283.1-P	Field mustard	nucleus	15.5	17.19
TraesCS2D01G461700.3	Wheat	nucleus	6.99	17.02
TraesCS2B01G483300.1	Wheat	nucleus	6.99	17.02
TraesCS2A01G461700.2	Wheat	nucleus	6.99	17.02
HORVU2Hr1G104040.6	Barley	nucleus	6.99	17.02
Solyc04g007430.1.1	Tomato	nucleus	6.55	16.3
Bra007430.1-P	Field mustard	nucleus	14.85	15.96
Bra037312.1-P	Field mustard	nucleus	6.99	15.31
Bra011237.1-P	Field mustard	plastid	6.99	14.81
Zm00001d026317_P003	Maize	nucleus, plastid	7.64	14.77
Bra020017.1-P	Field mustard	nucleus	15.5	14.37
PGSC0003DMT400015377	Potato	nucleus	6.33	14.29
Bra031668.1-P	Field mustard	nucleus	15.07	14.02
Bra007863.1-P	Field mustard	nucleus	10.26	13.91
Bra011740.1-P	Field mustard	nucleus, plastid	10.7	13.84
Bra010591.1-P	Field mustard	nucleus, plastid	10.04	13.49
Bra000560.1-P	Field mustard	nucleus	11.14	13.14
Bra032111.1-P	Field mustard	nucleus	9.61	12.64
Bra020398.1-P	Field mustard	nucleus	7.64	12.5
Bra002679.1-P	Field mustard	nucleus	7.86	12.46
Bra006788.1-P	Field mustard	nucleus	7.86	12.0
Bra036256.1-P	Field mustard	nucleus	5.68	11.4
Bra000436.1-P	Field mustard	nucleus	10.04	11.39
Bra003483.1-P	Field mustard	nucleus	7.42	11.07
Bra000872.1-P	Field mustard	nucleus	7.42	11.0
Bra004489.1-P	Field mustard	nucleus	9.61	11.0
Bra018539.1-P	Field mustard	nucleus	5.9	10.63
Bra033368.1-P	Field mustard	nucleus	6.99	10.29
Bra007660.1-P	Field mustard	nucleus	8.52	9.24

Protein Annotations

EnsemblPlants:Bra011062.1	EnsemblPlants:Bra011062.1-P	EnsemblPlantsGene:Bra011062	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF145	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025458E3	UniProt:M4D3K8	MapMan:15.5.32	:

Description

AT4G28811 (E=2e-015) | transcription regulator

Coordinates

chrA01:-:4141208..4151786

Molecular Weight (calculated)

50157.3 Da

IEP (calculated)

8.211

GRAVY (calculated)

-0.603

Length

458 amino acids

Sequence
(BLAST)

001: MATLLPFSSV VNLRAILSMG ERASWVVRES RRYRDLCVQT SGQGESGGGE RPRGVPSTLG SRLREVGVQR GASTSWSPVV NRRGSSPETR FSKGRGEDDI
101: VELLWKSGHL VRSSQAQRPS LPPPPPVLRG SGSGSGGGGG EESAPLPPPP PPLYTLQQPS DQNLFIREDE MASWLHHHPP REEDEFSSQL FYSGLVTTPF
201: TQPQGSVSLT QLLPLQPPPA AAAGSAIYTP TPAERPMGQV IAERRAENFF NFSRLRGDLH TSGGVEVAAA PWVPVVVRDL TQVGSSATPL SSATTESCLT
301: PAMVTGGVAQ TFAVPRAVEM VCEITGPSSF VVSKVETKQV QMQQATETEA AEERKRKERE EPVDDTERRR EKINEKMKAL QELIPRCNKT DKASMLEDAI
401: QYVKSLQMQI QRRREKINEK LKALQELIPR CNKNQSQVSF SQASSSKEPE DQDNKPIG

Best Arabidopsis Sequence Match ( AT4G28790.2 )
(BLAST)

001: MTWKPKMLIL SHDLISPEKY IMGEDDIVEL LGKSSQVVTS SQTQTPSCDP PLILRGSGSG DGEGNGPLPQ PPPPLYHQQS LFIQEDEMAS WLHQPNRQDY
101: LYSQLLYSGV ASTHPQSLAS LEPPPPPRAQ YILAADRPTG HILAERRAEN FMNISRQRGN IFLGGVEAVP SNSTLLSSAT ESIPATHGTE SRATVTGGVS
201: RTFAVPGLGP RGKAVAIETA GTQSWGLCKA ETEPVQRQPA TETDITDERK RKTREETNVE NQGTEEARDS TSSKRSRAAI MHKLSERRRR QKINEMMKAL
301: QELLPRCTKT DRSSMLDDVI EYVKSLQSQI QGKHLRIFRS

Arabidopsis Description

BHLH23Uncharacterized protein At4g28790 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.