Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35220 | Canola | nucleus | 34.62 | 38.54 |
| CDY06870 | Canola | nucleus | 38.5 | 34.95 |
| AT4G28815.1 | Thale cress | vacuole | 25.42 | 34.2 |
| CDY06867 | Canola | nucleus | 39.71 | 34.02 |
| AT4G28800.2 | Thale cress | nucleus | 37.53 | 33.92 |
| AT4G28811.1 | Thale cress | nucleus | 44.55 | 33.82 |
| CDY06865 | Canola | nucleus | 29.3 | 33.7 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 12.11 | 31.85 |
| Bra011062.1-P | Field mustard | cytosol | 33.41 | 30.13 |
| Bra011061.1-P | Field mustard | nucleus | 37.05 | 29.59 |
| AT2G20180.2 | Thale cress | nucleus | 33.9 | 29.29 |
| CDY35224 | Canola | nucleus | 17.68 | 28.19 |
| Os04t0618600-01 | Rice | nucleus | 11.86 | 27.07 |
| AT5G67110.1 | Thale cress | nucleus | 13.56 | 26.67 |
| TraesCS2A01G461700.2 | Wheat | nucleus | 12.11 | 26.6 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 12.11 | 26.6 |
| TraesCS2B01G483300.1 | Wheat | nucleus | 12.11 | 26.6 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 12.11 | 26.6 |
| EES11436 | Sorghum | nucleus | 12.11 | 26.6 |
| CDY35222 | Canola | nucleus | 36.8 | 26.34 |
| Zm00001d002288_P002 | Maize | nucleus | 12.59 | 24.3 |
| Solyc04g007430.1.1 | Tomato | nucleus | 9.93 | 22.28 |
| Zm00001d026317_P003 | Maize | nucleus, plastid | 12.59 | 21.94 |
| PGSC0003DMT400015377 | Potato | nucleus | 9.69 | 19.7 |
| AT3G59060.2 | Thale cress | nucleus | 20.58 | 19.14 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 21.79 | 19.07 |
| AT4G36930.1 | Thale cress | nucleus | 16.95 | 18.77 |
| AT4G00050.1 | Thale cress | nucleus | 17.43 | 18.05 |
| AT5G58010.1 | Thale cress | nucleus | 12.83 | 17.85 |
| AT2G46970.1 | Thale cress | nucleus | 16.95 | 16.83 |
| AT1G09530.3 | Thale cress | nucleus | 21.07 | 16.6 |
| AT3G62090.2 | Thale cress | nucleus | 13.56 | 15.43 |
| AT4G30980.2 | Thale cress | nucleus, plastid | 13.32 | 15.36 |
| AT2G24260.1 | Thale cress | nucleus | 12.83 | 15.14 |
| AT4G02590.1 | Thale cress | nucleus | 10.65 | 14.19 |
| AT1G03040.3 | Thale cress | nucleus | 10.65 | 13.21 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:829000 | EMBL:AB493705 | ProteinID:AEE85544.1 | ProteinID:AEE85545.1 |
| ProteinID:ANM66994.1 | ProteinID:ANM66996.1 | ProteinID:ANM66999.1 | ArrayExpress:AT4G28790 | EnsemblPlantsGene:AT4G28790 | RefSeq:AT4G28790 |
| TAIR:AT4G28790 | RefSeq:AT4G28790-TAIR-G | EnsemblPlants:AT4G28790.1 | TAIR:AT4G28790.1 | Unigene:At.31988 | EMBL:BT015828 |
| EMBL:BT020214 | UniProt:C0SVK2 | ProteinID:CAA22973.1 | ProteinID:CAB81467.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | RefSeq:NP_001320083.1 | RefSeq:NP_001328852.1 | RefSeq:NP_001328854.1 | RefSeq:NP_001328857.1 | RefSeq:NP_974634.1 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF145 | UniProt:Q9SVU6 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00000A6306 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
BHLH23Uncharacterized protein At4g28790 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVK2]
Coordinates
chr4:+:14218260..14220998
Molecular Weight (calculated)
46073.0 Da
IEP (calculated)
6.864
GRAVY (calculated)
-0.632
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MTWKPKMLIL SHDLISPEKY IMGEDDIVEL LGKSSQVVTS SQTQTPSCDP PLILRGSGSG DGEGNGPLPQ PPPPLYHQQS LFIQEDEMAS WLHQPNRQDY
101: LYSQLLYSGV ASTHPQSLAS LEPPPPPRAQ YILAADRPTG HILAERRAEN FMNISRQRGN IFLGGVEAVP SNSTLLSSAT ESIPATHGTE SRATVTGGVS
201: RTFAVPGLGP RGKAVAIETA GTQSWGLCKA ETEPVQRQPA TETDITDERK RKTREETNVE NQGTEEARDS TSSKRSRAAI MHKLSERRRR QKINEMMKAL
301: QELLPRCTKT DRSSMLDDVI EYVKSLQSQI QMFSMGHVMI PPMMYAGNIQ QQYMPHMAMG MNRPPAFIPF PRQAHMAEGV GPVDLFRENE ETEQETMSLL
401: LREDKRTKQK MFS
101: LYSQLLYSGV ASTHPQSLAS LEPPPPPRAQ YILAADRPTG HILAERRAEN FMNISRQRGN IFLGGVEAVP SNSTLLSSAT ESIPATHGTE SRATVTGGVS
201: RTFAVPGLGP RGKAVAIETA GTQSWGLCKA ETEPVQRQPA TETDITDERK RKTREETNVE NQGTEEARDS TSSKRSRAAI MHKLSERRRR QKINEMMKAL
301: QELLPRCTKT DRSSMLDDVI EYVKSLQSQI QMFSMGHVMI PPMMYAGNIQ QQYMPHMAMG MNRPPAFIPF PRQAHMAEGV GPVDLFRENE ETEQETMSLL
401: LREDKRTKQK MFS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.