Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003483.1-P | Field mustard | nucleus | 60.88 | 71.99 |
| CDX67873 | Canola | nucleus | 60.33 | 71.34 |
| CDY65446 | Canola | nucleus | 63.91 | 70.09 |
| CDX76616 | Canola | extracellular | 66.39 | 67.32 |
| CDY11401 | Canola | extracellular | 65.01 | 67.05 |
| Bra007660.1-P | Field mustard | nucleus | 63.36 | 54.5 |
| AT2G46970.1 | Thale cress | nucleus | 47.11 | 41.11 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 13.5 | 24.5 |
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 11.85 | 23.89 |
| AT5G67110.1 | Thale cress | nucleus | 13.5 | 23.33 |
| AT4G00050.1 | Thale cress | nucleus | 20.94 | 19.05 |
| KRH33663 | Soybean | nucleus | 22.04 | 17.82 |
| AT2G20180.2 | Thale cress | nucleus | 21.49 | 16.32 |
| AT3G59060.2 | Thale cress | nucleus | 19.56 | 15.99 |
| AT4G36930.1 | Thale cress | nucleus | 16.25 | 15.82 |
| Os05t0139100-01 | Rice | nucleus | 21.76 | 15.64 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 21.49 | 15.54 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 21.49 | 15.54 |
| AT5G58010.1 | Thale cress | nucleus | 12.67 | 15.49 |
| Zm00001d024783_P001 | Maize | nucleus | 21.49 | 15.45 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 21.21 | 15.19 |
| KRH68348 | Soybean | nucleus | 21.21 | 14.89 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 20.11 | 14.81 |
| KRG96615 | Soybean | nucleus | 20.94 | 14.67 |
| AT4G28815.1 | Thale cress | vacuole | 12.12 | 14.33 |
| AT1G09530.3 | Thale cress | nucleus | 20.39 | 14.12 |
| Zm00001d040536_P005 | Maize | nucleus | 22.04 | 14.11 |
| AT2G24260.1 | Thale cress | nucleus | 13.5 | 14.0 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 18.18 | 13.98 |
| AT4G02590.1 | Thale cress | nucleus | 11.85 | 13.87 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 22.31 | 13.66 |
| AT4G28790.1 | Thale cress | nucleus | 15.43 | 13.56 |
| AT4G30980.2 | Thale cress | nucleus, plastid | 13.22 | 13.41 |
| AT4G28800.2 | Thale cress | nucleus | 16.8 | 13.35 |
| KXG32305 | Sorghum | nucleus | 22.04 | 13.24 |
| AT1G03040.3 | Thale cress | nucleus | 12.12 | 13.21 |
| PGSC0003DMT400047079 | Potato | nucleus | 25.62 | 13.14 |
| Os01t0286100-01 | Rice | nucleus | 22.04 | 12.56 |
| Zm00001d008205_P001 | Maize | nucleus | 22.04 | 12.54 |
| Solyc01g102300.2.1 | Tomato | nucleus | 24.24 | 12.31 |
| KXG21255 | Sorghum | nucleus | 22.86 | 12.06 |
| AT4G28811.1 | Thale cress | nucleus | 17.91 | 11.95 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:825382 | UniProt:A0A178VFI3 | EMBL:AB090874 | ProteinID:AEE80306.1 |
| ProteinID:AEE80307.1 | ArrayExpress:AT3G62090 | EnsemblPlantsGene:AT3G62090 | RefSeq:AT3G62090 | TAIR:AT3G62090 | RefSeq:AT3G62090-TAIR-G |
| EnsemblPlants:AT3G62090.2 | TAIR:AT3G62090.2 | Unigene:At.50304 | EMBL:BT033108 | ProteinID:CAB71869.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0010017 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| RefSeq:NP_001078329.1 | RefSeq:NP_191768.2 | ProteinID:OAP04428.1 | PFAM:PF00010 | Symbol:PIL2 | PO:PO:0000293 |
| PO:PO:0009005 | PO:PO:0009047 | PO:PO:0020100 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 |
| UniProt:Q8L5W7 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000A7B30 | InterPro:bHLH_dom | SEG:seg |
Description
PIF6PIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VFI3]
Coordinates
chr3:-:22988547..22990709
Molecular Weight (calculated)
40549.2 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.636
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MMFLPTDYCC RLSDQEYMEL VFENGQILAK GQRSNVSLHN QRTKSIMDLY EAEYNEDFMK SIIHGGGGAI TNLGDTQVVP QSHVAAAHET NMLESNKHVD
101: DSETLKASSS KRMMVDYHNR KKIKFIPPDE QSVVADRSFK LGFDTSSVGF TEDSEGSMYL SSSLDDESDD ARPQVPARTR KALVKRKRNA EAYNSPERNQ
201: RNDINKKMRT LQNLLPNSHK DDNESMLDEA INYMTNLQLQ VQMMTMGNRF VTPSMMMPLG PNYSQMGLAM GVGMQMGEQQ FLPAHVLGAG LPGINDSADM
301: LRFLNHPGLM PMQNSAPFIP TENCSPQSVP PSCAAFPNQI PNPNSLSNLD GATLHKKSRK TNR
101: DSETLKASSS KRMMVDYHNR KKIKFIPPDE QSVVADRSFK LGFDTSSVGF TEDSEGSMYL SSSLDDESDD ARPQVPARTR KALVKRKRNA EAYNSPERNQ
201: RNDINKKMRT LQNLLPNSHK DDNESMLDEA INYMTNLQLQ VQMMTMGNRF VTPSMMMPLG PNYSQMGLAM GVGMQMGEQQ FLPAHVLGAG LPGINDSADM
301: LRFLNHPGLM PMQNSAPFIP TENCSPQSVP PSCAAFPNQI PNPNSLSNLD GATLHKKSRK TNR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.