Factsheet for Os01t0286100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0618200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	Os02t0618200-01	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32305	Sorghum	nucleus	65.93	69.54
Zm00001d040536_P005	Maize	nucleus	60.28	67.72
Zm00001d008205_P001	Maize	nucleus	62.01	61.91
Os05t0139100-01	Rice	nucleus	37.36	47.13
HORVU1Hr1G017900.1	Barley	nucleus	34.54	44.62
TraesCS1B01G100400.2	Wheat	nucleus	35.16	44.62
TraesCS1D01G084200.1	Wheat	nucleus	35.01	44.42
TraesCS1A01G083000.1	Wheat	nucleus	35.32	44.38
VIT_07s0005g02510.t01	Wine grape	nucleus	13.34	42.5
Os04t0618600-01	Rice	nucleus	9.73	34.25
GSMUA_Achr5P18390_001	Banana	nucleus	30.77	32.34
KRH69138	Soybean	cytosol, nucleus, vacuole	8.95	31.67
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	9.26	29.95
VIT_14s0060g00260.t01	Wine grape	nucleus	32.03	28.77
CDX94963	Canola	nucleus	21.51	27.51
Bra020017.1-P	Field mustard	nucleus	21.19	27.33
CDY06358	Canola	nucleus	21.04	27.29
CDY64745	Canola	nucleus	21.51	27.29
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	25.27	27.15
Bra031668.1-P	Field mustard	nucleus	20.88	27.03
KRH33733	Soybean	nucleus	29.2	26.92
CDY22636	Canola	nucleus	20.57	26.68
KRG90443	Soybean	nucleus	30.14	26.59
KRG96663	Soybean	nucleus	26.06	26.22
PGSC0003DMT400047079	Potato	nucleus	28.57	25.71
Solyc01g102300.2.1	Tomato	nucleus	28.73	25.59
Os03t0782500-01	Rice	nucleus	16.33	25.37
KRH68390	Soybean	nucleus	24.8	25.32
AT1G09530.3	Thale cress	nucleus	20.72	25.19
Os02t0805250-00	Rice	nucleus	10.99	25.0
Os12t0610200-01	Rice	nucleus	17.27	24.72
Os07t0182200-01	Rice	cytosol	5.18	24.26
Os07t0143200-01	Rice	nucleus	15.7	24.15
AT2G46970.1	Thale cress	nucleus	15.23	23.32
Bra003483.1-P	Field mustard	nucleus	11.15	23.13
CDX67873	Canola	nucleus	11.15	23.13
Bra004489.1-P	Field mustard	nucleus	14.44	23.0
CDX80064	Canola	nucleus	14.44	23.0
KRH33663	Soybean	nucleus	15.86	22.49
CDY66254	Canola	nucleus	13.97	22.25
AT3G62090.2	Thale cress	nucleus	12.56	22.04
KRH68348	Soybean	nucleus	17.58	21.66
CDY65446	Canola	nucleus	11.15	21.45
CDX83349	Canola	nucleus	13.34	21.04
Bra000436.1-P	Field mustard	nucleus	13.34	21.04
KRG96615	Soybean	nucleus	16.64	20.46
CDY50911	Canola	nucleus	8.63	20.3
Os10t0556200-01	Rice	nucleus	14.44	19.78
CDY11401	Canola	extracellular	10.2	18.47
CDX76616	Canola	extracellular	10.36	18.44
Os06t0184000-00	Rice	nucleus	11.3	18.09
Os03t0797600-01	Rice	nucleus	8.16	17.69
Bra007660.1-P	Field mustard	nucleus	10.2	15.4
Os02t0795800-00	Rice	endoplasmic reticulum, mitochondrion, nucleus, plastid	6.59	15.0
Os03t0639300-01	Rice	nucleus	6.75	14.01
Os02t0564700-01	Rice	nucleus	9.89	12.02
Os06t0193400-01	Rice	nucleus	8.63	11.51

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	EntrezGene:4327916	EMBL:AK102252	ProteinID:BAF04689.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009987	GO:GO:0046983	GO:GO:0090229	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlantsGene:Os01g0286100	EnsemblPlants:Os01t0286100-01	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF284
UniProt:Q0JNI9	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000188AE78	RefSeq:XP_015619034.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

PIL15Phytochrome-interacting factor-like protein, Basic helix-loop-helix factor, Repression of seedling growth in the dark (Os01t0286100-01)

Coordinates

chr1:-:10271157..10274304

Molecular Weight (calculated)

66593.2 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.475

Length

637 amino acids

Sequence
(BLAST)

001: MSDGNDFAEL LWENGQAVVH GRKKHPQPAF PPFGFFGGTG GGGGGSSSRA QERQPGGIDA FAKVGGGFGA LGMAPAVHDF ASGFGATTQD NGDDDTVPWI
101: HYPIIDDEDA AAPAALAAAD YGSDFFSELQ AAAAAAAAAA PPTDLASLPA SNHNGATNNR NAPVATTTTR EPSKESHGGL SVPTTRAEPQ PQPQLAAAKL
201: PRSSGSGGGE GVMNFSLFSR PAVLARATLE SAQRTQGTDN KASNVTASNR VESTVVQTAS GPRSAPAFAD QRAAAWPPQP KEMPFASTAA APMAPAVNLH
301: HEMGRDRAGR TMPVHKTEAR KAPEATVATS SVCSGNGAGS DELWRQQKRK CQAQAECSAS QDDDLDDEPG VLRKSGTRST KRSRTAEVHN LSERRRRDRI
401: NEKMRALQEL IPNCNKIDKA SMLDEAIEYL KTLQLQVQMM SMGTGLCIPP MLLPTAMQHL QIPPMAHFPH LGMGLGYGMG VFDMSNTGAL QMPPMPGAHF
501: PCPMIPGASP QGLGIPGTST MPMFGVPGQT IPSSASSVPP FASLAGLPVR PSGVPQVSGA MANMVQDQQQ GIANQQQQCL NKEAIQGANP GDSQMQIIMQ
601: GDNENFRIPS SAQTKSSQFS DGTGKGTNAR ERDGAET

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.