Factsheet for Os02t0618200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0286100-01
Os01t0876800-00
Os01t0911700-02
Os01t0958500-01
Os05t0139100-01
Os07t0615800-00
Os09t0532400-01
Os11t0547000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	Os01t0876800-00	AT1G33470.1	21798944
AT5G61380.1	Os01t0958500-01	AT1G33470.1	21798944
AT5G61380.1	Os11t0547000-01	AT1G68050.1	14654842
AT5G61380.1	Os01t0286100-01	AT2G46970.1	11828029
AT5G61380.1	Os05t0139100-01	AT2G46970.1	11828029
AT5G61380.1	Os07t0615800-00	AT3G16980.1	21798944
AT5G61380.1	Os01t0911700-02	AT3G24650.1	10743655
AT5G61380.1	Os09t0532400-01	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05438	Sorghum	nucleus	83.78	82.82
Zm00001d017241_P002	Maize	nucleus	80.31	80.46
TraesCS6B01G253900.1	Wheat	nucleus	76.45	76.74
HORVU6Hr1G057630.1	Barley	nucleus	76.25	75.67
Zm00001d051114_P001	Maize	nucleus	79.34	75.27
Zm00001d003811_P001	Maize	cytosol	45.95	73.91
Zm00001d018818_P001	Maize	cytosol	42.86	73.03
Zm00001d043140_P001	Maize	cytosol	42.86	73.03
Zm00001d044406_P001	Maize	cytosol	42.28	72.04
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	76.64	70.64
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	76.64	70.14
Zm00001d005366_P001	Maize	cytosol	49.03	46.86
GSMUA_Achr10P...	Banana	nucleus	48.84	46.68
GSMUA_Achr9P19550_001	Banana	nucleus	47.1	46.3
GSMUA_Achr2P04570_001	Banana	nucleus	48.46	45.72
VIT_17s0000g06520.t01	Wine grape	cytosol	13.71	44.65
Solyc06g069690.2.1	Tomato	nucleus	42.08	43.43
VIT_17s0000g06570.t01	Wine grape	nucleus	45.95	43.19
KRH54582	Soybean	nucleus	46.33	43.01
KRH63298	Soybean	nucleus	46.33	42.86
KRH56889	Soybean	nucleus	47.1	42.43
PGSC0003DMT400050252	Potato	nucleus	44.59	41.92
Solyc03g115770.2.1	Tomato	nucleus	44.59	41.85
KRH03510	Soybean	nucleus	46.53	41.62
PGSC0003DMT400083086	Potato	nucleus	43.82	41.35
CDX87210	Canola	nucleus	39.58	40.92
Bra035933.1-P	Field mustard	nucleus	38.8	39.49
VIT_17s0000g06560.t01	Wine grape	plastid	10.42	38.85
CDY02151	Canola	nucleus	40.93	38.76
CDY64140	Canola	nucleus	41.12	37.17
Bra012964.1-P	Field mustard	nucleus	41.12	36.98
AT5G61380.1	Thale cress	nucleus	41.7	34.95
Os09t0532400-01	Rice	nucleus	21.62	17.98
Os07t0695100-01	Rice	nucleus	25.68	17.92
Os11t0157600-01	Rice	cytosol, nucleus	23.94	17.79
Os03t0284100-01	Rice	nucleus	20.66	14.36

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	EntrezGene:4330000	EMBL:AB189038	ProteinID:BAD21456.1	ProteinID:BAD21598.1
ProteinID:BAF09362.1	ProteinID:BAS79797.1	InterPro:CCT_domain	InterPro:CheY-like_superfamily	ProteinID:EEE57385.1	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0010031	GO:GO:0010468	GO:GO:0010629	GO:GO:0048511
InterPro:IPR001789	InterPro:IPR010402	EnsemblPlantsGene:Os02g0618200	EnsemblPlants:Os02t0618200-01	PFAM:PF00072	PFAM:PF06203
PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF1	UniProt:Q689G9	SMART:SM00448
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0000377BD4	RefSeq:XP_015626003.1	SEG:seg	:

Description

TIMING OF CAB EXPRESSION 1Signal transduction response regulator, receiver region domain containing protein. (Os02t0618200-01)

Coordinates

chr2:+:24569489..24572391

Molecular Weight (calculated)

57880.9 Da

IEP (calculated)

6.042

GRAVY (calculated)

-0.665

Length

518 amino acids

Sequence
(BLAST)

001: MVGAGEGDRV GGGAAVGGGQ QFVDRSKVRI LLCDSDPSSS REVLRLLCNC SYQVTCAKSP RQVINVLNCE AGEIDIILAE VDLPVSKCFK MLKYIARNKE
101: LRHIPIIMMS NRDEVSVVVK CLRLGAAEYL VKPLRMNELL NLWTHVWRRR RMLGLSEKNF FNDNFELALS EPSDANTNST TLLSDDTDDK PKENINQETS
201: TSNQHEYESN PSDAEPKQKG TPEGLLVSTE GGDQASSPGV MFSRPIKTNL RVAESSAFLA YVKSSTPTTS SFDSELQKGG NRLDSSDHRG NFSSTTDRSD
301: TGTDVNIRDK EAFEMPVQYP VVCFSSSNLH LERSNEGQND ASGTPPVYHF PFYYPGMMDH GMTHPPVQNF QGNINNAQVH TPQTLLPQYN VYPQCHGVSM
401: MPPFQYNPAG MSIQSNQLPT QNMWPQASST PMPEETCSRS ERRAAALAKF RLKRKERCFD KKVRYVNRKK LAETRPRVRG QFVRQANYTD ITSTGDDISE
501: DEDDDPSSRE VEMVSSPE

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.