Factsheet for Solyc06g069690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005300.2.1
Solyc01g102300.2.1
Solyc03g005680.2.1
Solyc03g081240.2.1
Solyc06g083590.2.1
Solyc06g083600.1.1
Solyc09g090520.2.1
Solyc11g044470.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	Solyc11g044470.1.1	AT1G33470.1	21798944
AT5G61380.1	Solyc01g005300.2.1	AT1G68050.1	14654842
AT5G61380.1	Solyc03g005680.2.1	AT2G33410.1	21798944
AT5G61380.1	Solyc09g090520.2.1	AT2G33410.1	21798944
AT5G61380.1	Solyc01g102300.2.1	AT2G46970.1	11828029
AT5G61380.1	Solyc06g083590.2.1	AT3G24650.1	10743655
AT5G61380.1	Solyc06g083600.1.1	AT3G24650.1	10743655
AT5G61380.1	Solyc03g081240.2.1	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083086	Potato	nucleus	91.04	83.24
Solyc03g115770.2.1	Tomato	nucleus	65.34	59.42
VIT_17s0000g06570.t01	Wine grape	nucleus	59.56	54.27
KRH54582	Soybean	nucleus	59.76	53.76
KRH63298	Soybean	nucleus	59.36	53.21
KRH56889	Soybean	nucleus	58.37	50.96
KRH03510	Soybean	nucleus	58.37	50.6
Bra035933.1-P	Field mustard	nucleus	50.2	49.51
CDX87210	Canola	nucleus	49.0	49.1
CDY02151	Canola	nucleus	50.0	45.89
CDY64140	Canola	nucleus	50.6	44.33
Bra012964.1-P	Field mustard	nucleus	50.6	44.1
AT5G61380.1	Thale cress	nucleus	51.99	42.23
EES05438	Sorghum	nucleus	44.02	42.18
GSMUA_Achr9P19550_001	Banana	nucleus	44.22	42.13
Os02t0618200-01	Rice	nucleus	43.43	42.08
GSMUA_Achr2P04570_001	Banana	nucleus	45.82	41.89
Zm00001d017241_P002	Maize	nucleus	42.83	41.59
GSMUA_Achr10P...	Banana	nucleus	44.82	41.51
TraesCS6B01G253900.1	Wheat	nucleus	42.43	41.28
HORVU6Hr1G057630.1	Barley	nucleus	42.43	40.8
Zm00001d051114_P001	Maize	nucleus	43.03	39.56
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	42.63	38.08
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	42.63	37.81
Zm00001d003811_P001	Maize	cytosol	21.31	33.23
Zm00001d018818_P001	Maize	cytosol	18.73	30.92
Zm00001d043140_P001	Maize	cytosol	18.73	30.92
Zm00001d044406_P001	Maize	cytosol	18.33	30.26
Zm00001d005366_P001	Maize	cytosol	22.31	20.66
Solyc03g081270.1.1	Tomato	plastid	9.56	18.9
Solyc03g081240.2.1	Tomato	nucleus	24.5	18.09
Solyc10g005030.2.1	Tomato	nucleus	22.91	17.83
Solyc04g049670.2.1	Tomato	nucleus	21.12	16.75
Solyc10g086000.1.1	Tomato	nucleus	20.72	14.25

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789	InterPro:IPR010402
UniProt:K4C8E2	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF1	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	EnsemblPlantsGene:Solyc06g069690.2	EnsemblPlants:Solyc06g069690.2.1
UniParc:UPI0002766B61	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:43403275..43408847

Molecular Weight (calculated)

56411.2 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.474

Length

502 amino acids

Sequence
(BLAST)

001: MEKNETVRTG DGFIDRSKVR ILLCDSDAKS SEEVFTLLCK CSYQVISVRS PRQVIDALNA EGPHIDLILS EVDLPMSKGF KMLKHIMRDK QLRHIPVIMM
101: SSQDEVSIVI KCLKFGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLVEKN IINYDFNLVV SEPSDPNTNS TTLFSDDTDD KSWKCVNPEI CPSTMLQEEA
201: RCKSNASTDA APIETAVVVP FEHPPNAPGT DDQSTGEISL FPKKSELRIG ESSAFSTYVK SSLPKSTGQS PTSIRGSVPQ QLGIEENTSL GGHEHIDSNI
301: QVTGDVESHL QEVMYSPFIT GISTPLELKN GGILSGVMNQ VMMPSTQIYH ESLQHLHNHA NSAMLPQYNY MPQYPHMHGI SSYPFYPIGM CLQPGQLPAA
401: HPWHSFGSSS SAEIKVSKVD LRETALMKFR QKRKERCFDK KIRYINRKQV AEQRPRLRGQ FVRKVNGVNV DVNGQPSSAG NDDVEEEEVQ IEYVDSSHED
501: DL

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.