Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g111780.2.1
Solyc03g123840.2.1
Solyc04g056280.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G33410.1 Solyc03g123840.2.1 AT3G21215.1 21798944
AT4G14300.1 Solyc01g111780.2.1 AT2G16950.1 14756317
AT4G14300.1 Solyc04g056280.2.1 AT5G10270.1 12678503
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400035000 Potato nucleus 93.44 90.27
Solyc09g090520.2.1 Tomato nucleus 82.9 74.53
VIT_05s0049g01660.t01 Wine grape nucleus 70.26 64.66
CDY12068 Canola nucleus 50.82 60.61
AT4G14300.1 Thale cress nucleus 58.31 60.58
KRH34534 Soybean nucleus 66.51 60.3
KRG92276 Soybean endoplasmic reticulum 66.51 59.66
AT2G33410.1 Thale cress nucleus 55.74 58.91
CDX90262 Canola nucleus 52.46 58.64
Bra010757.1-P Field mustard nucleus 52.22 58.38
Bra005496.1-P Field mustard nucleus 51.29 58.24
KRH07772 Soybean cytosol 13.35 58.16
CDY17173 Canola nucleus 51.29 58.09
CDY67299 Canola nucleus 51.76 58.01
CDY23739 Canola nucleus 51.99 57.96
CDX79527 Canola nucleus 55.04 57.88
Bra021850.1-P Field mustard nucleus 49.41 57.49
CDX84689 Canola nucleus 54.1 56.62
Bra022938.1-P Field mustard nucleus 53.86 56.37
CDY37724 Canola nucleus 41.69 55.11
GSMUA_Achr5P17690_001 Banana nucleus 48.71 51.49
Solyc09g072790.2.1 Tomato nucleus 36.77 39.85
Solyc03g121710.2.1 Tomato nucleus 24.82 39.41
Solyc04g077520.2.1 Tomato nucleus 30.91 38.71
Solyc06g062740.1.1 Tomato cytosol 17.8 38.58
Solyc04g014820.2.1 Tomato cytosol 23.18 36.94
Solyc07g045240.2.1 Tomato nucleus 29.04 36.15
Solyc07g048030.2.1 Tomato nucleus 35.36 34.55
Solyc10g006050.2.1 Tomato nucleus 34.89 34.41
Solyc12g014600.1.1 Tomato nucleus 35.13 34.32
Solyc02g093340.2.1 Tomato nucleus 29.98 32.9
Solyc12g006180.1.1 Tomato nucleus 33.72 32.88
Solyc11g012470.1.1 Tomato nucleus 32.79 32.71
Solyc06g062730.1.1 Tomato nucleus 25.29 29.43
Solyc12g035280.1.1 Tomato cytosol, nucleus, plastid 23.42 26.95
Solyc02g090910.2.1 Tomato nucleus 23.18 26.33
Solyc11g044470.1.1 Tomato mitochondrion, nucleus, plastid 15.69 25.67
Solyc02g064540.1.1 Tomato nucleus 20.37 23.51
Solyc04g082770.2.1 Tomato cytosol, extracellular, nucleus, plastid 11.94 21.16
Solyc04g049920.2.1 Tomato nucleus 11.48 20.33
Solyc02g021560.2.1 Tomato nucleus 18.03 17.87
Solyc04g074310.2.1 Tomato nucleus 12.18 17.75
Solyc02g082270.2.1 Tomato nucleus 11.71 17.73
Solyc12g014210.1.1 Tomato nucleus 12.41 15.82
Solyc10g081330.1.1 Tomato nucleus 13.11 13.43
Solyc04g011560.2.1 Tomato nucleus 14.52 13.19
Solyc01g008970.2.1 Tomato nucleus 11.01 12.5
Protein Annotations
EnsemblPlants:Solyc03g005680.2.1EnsemblPlantsGene:Solyc03g005680.2Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488InterPro:DAZAP1_RRM2InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sf
InterPro:RRM_domPANTHER:PTHR44291PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360
SUPFAM:SSF54928UniParc:UPI0002769265UniProt:K4BDZ2MapMan:35.1::
Description
No Description!
Coordinates
chr3:-:484676..488663
Molecular Weight (calculated)
43488.1 Da
IEP (calculated)
6.144
GRAVY (calculated)
-0.752
Length
427 amino acids
Sequence
(BLAST)
001: MDSDQGKLFI GGVSWETSEE KMKEYFQGYG DVVQTVVMRD KITGKPRGFG FVVFADPSVI DRVLQDTHVI DGRTVEAKRA LSREEQQGPK SGNMGGGRSF
101: GGSGNTRTKK IFVGGLPPTL TEDDFRIYFE TYGNVTDVAI MYDQQTNRPR GFGFISFDSE DAVDRVLHKA YHDLSGKQVE VKRALPKDSN SGFGGRSTGN
201: GGSGMGGGSY QGYGDNPSSY DRMDTNRYMQ SQNTGGGYPS YGSSGYGTAG YGYGSSNNGM GYGAYGSYGG ANPGYGGVNP GYGGAAGAAF GNPNVPGTGY
301: GSGQAGGPRS SWGSQVSSGY GNMGYGNVSW GASSAGGGGG PANGGSAAGQ SPTGATGYGN QGYGYGGYGG NDGSYGGGAS GDMQSGGGYM GSGYGDASGN
401: SQGSGNYGAQ QNGPYGGGAP SRQAQQH
Best Arabidopsis Sequence Match ( AT4G14300.2 )
(BLAST)
001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
Arabidopsis Description
RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.