Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33410.1 | KRH44644 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | KRH47009 | AT3G21215.1 | 21798944 |
| AT4G14300.1 | KRG90653 | AT2G16950.1 | 14756317 |
| AT4G14300.1 | KRH36099 | AT2G16950.1 | 14756317 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34534 | Soybean | nucleus | 95.59 | 96.6 |
| KRH07772 | Soybean | cytosol | 15.97 | 77.55 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 75.21 | 77.16 |
| PGSC0003DMT400044195 | Potato | nucleus | 68.49 | 68.63 |
| Solyc09g090520.2.1 | Tomato | nucleus | 68.49 | 68.63 |
| PGSC0003DMT400035000 | Potato | nucleus | 61.97 | 66.74 |
| Solyc03g005680.2.1 | Tomato | nucleus | 59.66 | 66.51 |
| AT2G33410.1 | Thale cress | nucleus | 56.09 | 66.09 |
| CDX79527 | Canola | nucleus | 55.25 | 64.78 |
| CDY17173 | Canola | nucleus | 51.05 | 64.46 |
| Bra005496.1-P | Field mustard | nucleus | 50.84 | 64.36 |
| Bra021850.1-P | Field mustard | nucleus | 49.58 | 64.31 |
| AT4G14300.1 | Thale cress | nucleus | 55.46 | 64.23 |
| CDY37724 | Canola | nucleus | 43.28 | 63.78 |
| CDX84689 | Canola | nucleus | 54.62 | 63.73 |
| CDY23739 | Canola | nucleus | 51.26 | 63.71 |
| CDY12068 | Canola | nucleus | 47.9 | 63.69 |
| Bra022938.1-P | Field mustard | nucleus | 54.41 | 63.48 |
| CDY67299 | Canola | nucleus | 50.63 | 63.25 |
| CDX90262 | Canola | nucleus | 50.42 | 62.83 |
| Bra010757.1-P | Field mustard | nucleus | 50.21 | 62.57 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 50.42 | 59.41 |
| Zm00001d032739_P001 | Maize | nucleus | 52.73 | 56.66 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 53.57 | 56.42 |
| KXG38359 | Sorghum | nucleus | 53.57 | 56.29 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 53.57 | 56.17 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 53.57 | 56.17 |
| Zm00001d014058_P002 | Maize | plastid | 52.94 | 52.28 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 53.36 | 49.8 |
| KRG98573 | Soybean | nucleus | 42.23 | 41.96 |
| KRH46297 | Soybean | nucleus | 42.02 | 41.75 |
| KRH73860 | Soybean | nucleus | 40.97 | 40.88 |
| KRH74025 | Soybean | nucleus | 40.13 | 40.21 |
| KRH14284 | Soybean | nucleus | 40.34 | 40.17 |
| KRH14098 | Soybean | nucleus | 39.92 | 39.67 |
| KRH56541 | Soybean | nucleus | 16.6 | 39.5 |
| KRH07154 | Soybean | nucleus | 30.46 | 38.98 |
| KRG94084 | Soybean | nucleus | 29.83 | 37.97 |
| KRG93213 | Soybean | nucleus | 27.94 | 35.28 |
| KRH17717 | Soybean | nucleus | 26.05 | 35.23 |
| KRH52137 | Soybean | nucleus | 27.52 | 34.66 |
| KRH61448 | Soybean | nucleus | 27.73 | 34.38 |
| KRH23293 | Soybean | nucleus | 24.79 | 33.43 |
| KRH28467 | Soybean | cytosol | 22.06 | 28.77 |
| KRH77004 | Soybean | nucleus | 21.85 | 28.73 |
| KRH13261 | Soybean | cytosol | 7.35 | 28.23 |
| KRH75298 | Soybean | cytosol, nucleus | 5.67 | 27.27 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 18.07 | 26.54 |
| KRH40033 | Soybean | nucleus | 13.87 | 24.26 |
| KRH23771 | Soybean | nucleus | 13.87 | 24.26 |
| KRH51553 | Soybean | nucleus, plastid | 14.5 | 24.13 |
| KRH60871 | Soybean | nucleus, plastid | 14.5 | 24.13 |
| KRH18921 | Soybean | nucleus | 12.18 | 21.01 |
| KRH47731 | Soybean | nucleus | 11.55 | 20.6 |
| KRH26210 | Soybean | nucleus | 18.91 | 20.59 |
| KRG95365 | Soybean | nucleus | 14.5 | 20.54 |
| KRH16743 | Soybean | nucleus | 11.76 | 20.44 |
| KRH50169 | Soybean | nucleus | 16.39 | 20.31 |
| KRH55109 | Soybean | nucleus | 18.91 | 20.27 |
| KRH06306 | Soybean | nucleus | 11.34 | 20.07 |
| KRH67043 | Soybean | nucleus | 14.29 | 20.0 |
| KRH71299 | Soybean | nucleus | 15.97 | 19.79 |
| KRH64318 | Soybean | nucleus | 10.5 | 19.46 |
| KRH53608 | Soybean | nucleus | 9.87 | 19.11 |
| KRH06384 | Soybean | nucleus | 11.76 | 18.6 |
| KRH47819 | Soybean | nucleus | 11.34 | 18.24 |
| KRH62327 | Soybean | nucleus | 10.92 | 18.12 |
| KRH62942 | Soybean | mitochondrion | 7.56 | 17.65 |
| KRH53044 | Soybean | nucleus | 10.5 | 17.42 |
| KRH06373 | Soybean | nucleus | 9.87 | 16.97 |
| KRH47808 | Soybean | nucleus | 9.45 | 15.73 |
| KRG94993 | Soybean | nucleus | 14.5 | 14.4 |
| KRH14673 | Soybean | nucleus | 14.92 | 14.37 |
| KRH73477 | Soybean | nucleus | 14.92 | 14.31 |
| KRH66628 | Soybean | nucleus | 14.5 | 14.2 |
Protein Annotations
| EntrezGene:100786882 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02012736 | InterPro:DAZAP1_RRM2 | EnsemblPlantsGene:GLYMA_20G201300 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1NI06 | InterPro:IPR000504 |
| InterPro:IPR012677 | EnsemblPlants:KRG92276 | ProteinID:KRG92276 | ProteinID:KRG92276.1 | ProteinID:KRG92277.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000233DBA2 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr20:+:43820665..43824583
Molecular Weight (calculated)
47992.3 Da
IEP (calculated)
7.171
GRAVY (calculated)
-0.687
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDQGKLFI GGISWDTTED KLKEHFGNYG DVLSTSVMRE KNTGKPRGFG FVVFADPNIL DRVLEDKHVI DGRTVDAKKA FSREDQQISV TSRGGNSNSG
101: MNSENGGNIR TKKIFVGGLP PTLTEEKFRL YFESYGHVTD VVVMYDQNTG RPRGFGFISF DTEEAVDRVL HKSFHDLNGK QVEVKRALPK DANPGASGRM
201: MGGAGGGGAG IGGYQGYGAS GGSQNAYDGR MDSSRYMQPQ SAAGGFPPYG SSAYSAPGYG YGPANNGIGY GAYGSYGSAT AGYGGPAGAT YGNPNVPNAA
301: YAGGPPGGPR SSWPAQAPSG YGSMGYGNTA AWGAPSGGAG SGGGGPGSAT AGQSPGGAAG YGNQGYGYGG YAGYGGSDSS YGNSSAYGTV GGRTGSGPNS
401: NASAPGGTEL TSSGGSGNYM GGGYGDANGN SGYGNAAWRS EQTHASGNYG TPQGNGGQVG YGGGYGGAQS RQAQQQ
101: MNSENGGNIR TKKIFVGGLP PTLTEEKFRL YFESYGHVTD VVVMYDQNTG RPRGFGFISF DTEEAVDRVL HKSFHDLNGK QVEVKRALPK DANPGASGRM
201: MGGAGGGGAG IGGYQGYGAS GGSQNAYDGR MDSSRYMQPQ SAAGGFPPYG SSAYSAPGYG YGPANNGIGY GAYGSYGSAT AGYGGPAGAT YGNPNVPNAA
301: YAGGPPGGPR SSWPAQAPSG YGSMGYGNTA AWGAPSGGAG SGGGGPGSAT AGQSPGGAAG YGNQGYGYGG YAGYGGSDSS YGNSSAYGTV GGRTGSGPNS
401: NASAPGGTEL TSSGGSGNYM GGGYGDANGN SGYGNAAWRS EQTHASGNYG TPQGNGGQVG YGGGYGGAQS RQAQQQ
001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
Arabidopsis Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.