Factsheet for PGSC0003DMT400035000

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023680

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33410.1	PGSC0003DMT400023680	AT3G21215.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005680.2.1	Tomato	nucleus	90.27	93.44
PGSC0003DMT400044195	Potato	nucleus	81.9	76.21
VIT_05s0049g01660.t01	Wine grape	nucleus	71.27	67.89
KRH34534	Soybean	nucleus	66.52	62.42
AT4G14300.1	Thale cress	nucleus	57.69	62.04
KRG92276	Soybean	endoplasmic reticulum	66.74	61.97
CDY12068	Canola	nucleus	49.55	61.17
AT2G33410.1	Thale cress	nucleus	55.43	60.64
KRH07772	Soybean	cytosol	13.35	60.2
Bra005496.1-P	Field mustard	nucleus	50.91	59.84
CDY17173	Canola	nucleus	50.91	59.68
CDY23739	Canola	nucleus	51.58	59.53
CDX90262	Canola	nucleus	51.36	59.42
CDY67299	Canola	nucleus	51.13	59.32
Bra010757.1-P	Field mustard	nucleus	51.13	59.16
CDX79527	Canola	nucleus	54.3	59.11
CDX84689	Canola	nucleus	54.3	58.82
Bra022938.1-P	Field mustard	nucleus	54.07	58.58
Bra021850.1-P	Field mustard	nucleus	48.19	58.04
CDY37724	Canola	nucleus	41.18	56.35
GSMUA_Achr5P17690_001	Banana	nucleus	49.55	54.21
PGSC0003DMT400009762	Potato	nucleus	35.97	40.05
PGSC0003DMT400012586	Potato	nucleus	29.86	38.37
PGSC0003DMT400044868	Potato	nucleus	28.96	37.43
PGSC0003DMT400076643	Potato	nucleus	39.37	36.71
PGSC0003DMT400012372	Potato	nucleus	24.66	36.7
PGSC0003DMT400037271	Potato	nucleus	38.91	36.6
PGSC0003DMT400074192	Potato	nucleus	37.78	35.23
PGSC0003DMT400034757	Potato	nucleus	36.65	34.62
PGSC0003DMT400032811	Potato	nucleus	30.32	34.45
PGSC0003DMT400006638	Potato	nucleus	29.86	34.2
PGSC0003DMT400060554	Potato	nucleus	34.84	32.77
PGSC0003DMT400012369	Potato	nucleus	30.09	30.43
PGSC0003DMT400010280	Potato	cytosol	23.53	28.03
PGSC0003DMT400008944	Potato	nucleus	15.16	25.38
PGSC0003DMT400044866	Potato	extracellular	28.96	23.97
PGSC0003DMT400031324	Potato	cytosol	7.01	22.3
PGSC0003DMT400025900	Potato	nucleus	13.8	21.25
PGSC0003DMT400032256	Potato	nucleus	14.25	20.19
PGSC0003DMT400039802	Potato	nucleus	19.91	19.73
PGSC0003DMT400027411	Potato	nucleus	11.09	19.29
PGSC0003DMT400008213	Potato	nucleus	17.87	18.63
PGSC0003DMT400035478	Potato	nucleus, plastid	11.31	17.73
PGSC0003DMT400031418	Potato	extracellular, golgi	14.03	17.03
PGSC0003DMT400008583	Potato	nucleus	21.04	15.55
PGSC0003DMT400072501	Potato	nucleus	13.8	14.81
PGSC0003DMT400058431	Potato	nucleus	15.38	13.88
PGSC0003DMT400016249	Potato	nucleus	15.16	13.62

Protein Annotations

EntrezGene:102601968	Gene3D:3.30.70.330	MapMan:35.1	InterPro:DAZAP1_RRM2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1B1N0	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400013456	PGSC:PGSC0003DMG400013456	EnsemblPlants:PGSC0003DMT400035000	PFscan:PS50102	PANTHER:PTHR44291
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002963A2C	RefSeq:XP_006356068.1
SEG:seg	:	:	:	:	:

Description

Heterogeneous nuclear ribonucleoprotein 27C [Source:PGSC_GENE;Acc:PGSC0003DMG400013456]

Coordinates

chr3:-:680991..685320

Molecular Weight (calculated)

45091.0 Da

IEP (calculated)

6.533

GRAVY (calculated)

-0.736

Length

442 amino acids

Sequence
(BLAST)

001: MDSDQAKLFI GGISWETSEE RMKEYFQGYG DVLQTVVMRD KITGKPRGFG FVVFADPSVL DRVLQDTHVI DGRTVEAKRA LSREEQQGPK SGNMGSARSF
101: GGGGNTKTKK IFVGGLPPTL TEDGFRTYFE TYGNVTDVAI MFDQQTNRPR GFGFISFDSE DAVDRVLHKT YHDLSGKQVE VKRALPKDGN SGFGGRSTGN
201: GGSGMGGGSY QGYGASGDNP SSYDRMDTSR YMQSQNTGGG YPSYGSSGYG TAGYGYGSSN NGMGYGAYGS YGGANPGYGG VNPGYGSPAV AAFGNPNVPG
301: TGYGSGQAGG PRSSWGSQIP SGYGNMGYGN ASWGASSAGG AANGGSATGQ SPTGATGYGN QGYGYGGYGG NDGAYGNPSI GGGASGDMQS GGGYMGSGYG
401: DANGNSTLRS DTSQGSGNYG AQQNGPYGGG YGGAPSRQAQ QH

Best Arabidopsis Sequence Match ( AT4G14300.2 )
(BLAST)

001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q

Arabidopsis Description

RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.