Factsheet for PGSC0003DMT400039802

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014210.1.1	Tomato	nucleus	55.38	73.73
VIT_19s0014g01570.t01	Wine grape	nucleus	58.3	57.91
CDY55846	Canola	nucleus	51.57	57.36
AT3G15010.2	Thale cress	nucleus	51.35	56.68
Bra039664.1-P	Field mustard	nucleus	52.69	56.63
CDY24106	Canola	nucleus	52.24	56.42
CDY26001	Canola	nucleus	51.35	56.27
Bra038113.1-P	Field mustard	nucleus	50.9	54.83
CDY25867	Canola	nucleus	49.78	54.81
KRH55109	Soybean	nucleus	54.04	54.28
KRH26210	Soybean	nucleus	52.91	54.0
GSMUA_Achr5P09550_001	Banana	nucleus	44.39	53.23
GSMUA_Achr5P09540_001	Banana	nucleus	44.17	50.77
PGSC0003DMT400008213	Potato	nucleus	47.53	50.0
Os01t0614500-01	Rice	nucleus	46.86	46.76
TraesCS3D01G232300.1	Wheat	nucleus	45.96	46.59
TraesCS3A01G220400.1	Wheat	nucleus	45.96	46.59
HORVU3Hr1G053990.1	Barley	nucleus	45.96	46.49
TraesCS3B01G250700.1	Wheat	golgi	45.74	46.36
Zm00001d011336_P002	Maize	nucleus	45.74	45.54
EES03272	Sorghum	nucleus	45.07	45.17
Zm00001d044469_P003	Maize	nucleus	45.07	44.97
PGSC0003DMT400032256	Potato	nucleus	24.66	35.26
PGSC0003DMT400031324	Potato	cytosol	10.76	34.53
PGSC0003DMT400072501	Potato	nucleus	27.13	29.37
PGSC0003DMT400031418	Potato	extracellular, golgi	23.54	28.85
PGSC0003DMT400016249	Potato	nucleus	30.49	27.64
PGSC0003DMT400058431	Potato	nucleus	29.82	27.14
PGSC0003DMT400027411	Potato	nucleus	14.8	25.98
PGSC0003DMT400025900	Potato	nucleus	16.37	25.44
PGSC0003DMT400012372	Potato	nucleus	16.37	24.58
PGSC0003DMT400008944	Potato	nucleus	14.35	24.24
PGSC0003DMT400035478	Potato	nucleus, plastid	14.8	23.4
PGSC0003DMT400044868	Potato	nucleus	17.26	22.51
PGSC0003DMT400032811	Potato	nucleus	19.06	21.85
PGSC0003DMT400010280	Potato	cytosol	17.04	20.49
PGSC0003DMT400006638	Potato	nucleus	17.49	20.21
PGSC0003DMT400035000	Potato	nucleus	19.73	19.91
PGSC0003DMT400012369	Potato	nucleus	19.28	19.68
PGSC0003DMT400012586	Potato	nucleus	15.02	19.48
PGSC0003DMT400044195	Potato	nucleus	20.4	19.16
PGSC0003DMT400009762	Potato	nucleus	16.82	18.89
PGSC0003DMT400076643	Potato	nucleus	18.61	17.51
PGSC0003DMT400074192	Potato	nucleus	18.39	17.3
PGSC0003DMT400060554	Potato	nucleus	18.16	17.23
PGSC0003DMT400037271	Potato	nucleus	18.16	17.23
PGSC0003DMT400034757	Potato	nucleus	16.59	15.81
PGSC0003DMT400044866	Potato	extracellular	17.49	14.61
PGSC0003DMT400008583	Potato	nucleus	12.33	9.2

Protein Annotations

EntrezGene:102604895	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006950	GO:GO:0006952	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008219	GO:GO:0009058	GO:GO:0009693	GO:GO:0009987	GO:GO:0010150	InterPro:IPR000504
InterPro:IPR012677	UniProt:M1B8T4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400015382	PGSC:PGSC0003DMG400015382
EnsemblPlants:PGSC0003DMT400039802	PFscan:PS50102	PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294997E	RefSeq:XP_006358946.1	RefSeq:XP_015169671.1	SEG:seg

Description

Heterogeneous nuclear ribonucleoprotein A2/B1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015382]

Coordinates

chr12:+:258488..265530

Molecular Weight (calculated)

45193.0 Da

IEP (calculated)

8.327

GRAVY (calculated)

-0.389

Length

446 amino acids

Sequence
(BLAST)

001: MDSMKKRKLE DNGVVTDVPV ASRLSIEDAR KILESVTPEQ MLEILQNAVV RHPDVLDQVR EIVDRDATKR KLFVRGLGWE TTTEKIRSIF GTFGELEEAV
101: VILDKNTGKS KGYGFVTFKH VDGALLALKQ PSKHIDGRVT VTQLASAGIQ GGPGGGSSNN PVDVSLRKIY VSNVPYDMQS ERILQHFLMY GEIEEGPLGF
201: DKATGKSKGY ALFVYKTAEA AQSSLVDPVK NIDGHQLNCK LAIDGKKKPG VGGPGGAQVQ TDGHGDPMGP GQYGAPSGYG GFSGHSSYGG YGHGPNSALA
301: SGNGIGVGGP GGSSYGNQSV GGGYGSGIGG PYGGGSHYGG AGSAGYGGLT GGAAAGGGGY SGAGALGGAG GGLPGAGSTL GGAGRGSSMY GQPPSSAGMP
401: SGDYPPQGSH YGSLHQPHGL QNQGPGASAA PRVAPGGMYQ GMHSYY

Best Arabidopsis Sequence Match ( AT2G41060.1 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.