Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g062730.1.1 | Tomato | nucleus | 67.34 | 54.5 |
| PGSC0003DMT400012369 | Potato | nucleus | 72.05 | 48.97 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 34.01 | 34.59 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 41.08 | 34.56 |
| KRH23293 | Soybean | nucleus | 39.06 | 32.86 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 37.04 | 32.64 |
| CDY26229 | Canola | nucleus | 38.72 | 31.0 |
| CDY48318 | Canola | nucleus | 38.38 | 30.65 |
| AT1G17640.1 | Thale cress | nucleus | 38.05 | 30.62 |
| PGSC0003DMT400006638 | Potato | nucleus | 39.73 | 30.57 |
| Os02t0221500-01 | Rice | nucleus | 40.4 | 30.23 |
| EES06526 | Sorghum | nucleus | 39.73 | 30.18 |
| GSMUA_Achr10P... | Banana | nucleus | 33.67 | 30.03 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 40.07 | 29.68 |
| PGSC0003DMT400044868 | Potato | nucleus | 34.01 | 29.53 |
| Zm00001d016349_P002 | Maize | nucleus | 38.05 | 29.43 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 37.37 | 29.37 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 38.38 | 28.57 |
| Zm00001d046190_P001 | Maize | extracellular | 40.07 | 28.47 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 39.39 | 28.33 |
| EER88542 | Sorghum | nucleus | 39.39 | 28.26 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 38.38 | 27.87 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 38.72 | 27.84 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 38.72 | 27.78 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 40.07 | 26.8 |
| PGSC0003DMT400032811 | Potato | nucleus | 33.67 | 25.71 |
| PGSC0003DMT400012586 | Potato | nucleus | 29.63 | 25.58 |
| HORVU6Hr1G040220.5 | Barley | plastid | 39.06 | 25.0 |
| PGSC0003DMT400035000 | Potato | nucleus | 36.7 | 24.66 |
| PGSC0003DMT400009762 | Potato | nucleus | 31.65 | 23.68 |
| PGSC0003DMT400044195 | Potato | nucleus | 37.37 | 23.37 |
| Zm00001d053572_P002 | Maize | cytosol | 38.38 | 20.77 |
| PGSC0003DMT400034757 | Potato | nucleus | 32.66 | 20.73 |
| PGSC0003DMT400074192 | Potato | nucleus | 33.0 | 20.68 |
| PGSC0003DMT400037271 | Potato | nucleus | 32.66 | 20.64 |
| PGSC0003DMT400010280 | Potato | cytosol | 25.25 | 20.22 |
| PGSC0003DMT400060554 | Potato | nucleus | 31.99 | 20.21 |
| PGSC0003DMT400044866 | Potato | extracellular | 35.02 | 19.48 |
| PGSC0003DMT400076643 | Potato | nucleus | 30.64 | 19.2 |
| PGSC0003DMT400008944 | Potato | nucleus | 15.82 | 17.8 |
| PGSC0003DMT400031324 | Potato | cytosol | 8.08 | 17.27 |
| PGSC0003DMT400032256 | Potato | nucleus | 17.85 | 16.99 |
| PGSC0003DMT400008213 | Potato | nucleus | 23.91 | 16.75 |
| PGSC0003DMT400039802 | Potato | nucleus | 24.58 | 16.37 |
| PGSC0003DMT400025900 | Potato | nucleus | 15.49 | 16.03 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 14.14 | 14.89 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 18.18 | 14.84 |
| PGSC0003DMT400027411 | Potato | nucleus | 12.12 | 14.17 |
| PGSC0003DMT400016249 | Potato | nucleus | 21.21 | 12.8 |
| PGSC0003DMT400058431 | Potato | nucleus | 20.54 | 12.45 |
| PGSC0003DMT400072501 | Potato | nucleus | 16.16 | 11.65 |
| PGSC0003DMT400008583 | Potato | nucleus | 23.23 | 11.54 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400012372 | EnsemblPlantsGene:PGSC0003DMG400004849 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45276 | PANTHER:PTHR45276:SF2 | PFAM:PF00076 | PFscan:PS50102 | PGSC:PGSC0003DMG400004849 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000296709E | UniProt:M1A156 | MapMan:35.1 | : |
Description
Heterogeneous nuclear ribonucleoprotein A3 [Source:PGSC_GENE;Acc:PGSC0003DMG400004849]
Coordinates
chr6:-:48670899..48672716
Molecular Weight (calculated)
32790.7 Da
IEP (calculated)
5.040
GRAVY (calculated)
-0.780
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFDEERNEE TDQPNEDVEM ADKVGDREAD ELKPSINGCS ERKLFVGRIS TKTTEESFRE YFSKFGQVAD SVLMRDEDSG RRRGFGFVIY ADPEIADKVL
101: KEDHTIDEYI LFVYKVAVEE PVTNTTRIYV GGLPLSLTED ELKEHFSPYG YVVDHCIVLD RRTGRSRRFG YVSFDKEEAV EKVLSDGHIH ELCGKQVEIN
201: RAAPKRAGAA GYRSSSYGVH AYNGRGRGYG NSGSGWNDGG NGGYGGGGTN EAYAYGNTGA ANESYVPAYN GRRLGYGNSG NNWNYRGMGG YGGGGIK
101: KEDHTIDEYI LFVYKVAVEE PVTNTTRIYV GGLPLSLTED ELKEHFSPYG YVVDHCIVLD RRTGRSRRFG YVSFDKEEAV EKVLSDGHIH ELCGKQVEIN
201: RAAPKRAGAA GYRSSSYGVH AYNGRGRGYG NSGSGWNDGG NGGYGGGGTN EAYAYGNTGA ANESYVPAYN GRRLGYGNSG NNWNYRGMGG YGGGGIK
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.