Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G266900.1 | Wheat | nucleus | 83.11 | 97.62 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 86.94 | 96.26 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 83.78 | 93.23 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 56.31 | 85.62 |
| EER88542 | Sorghum | nucleus | 70.72 | 75.85 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 69.82 | 75.06 |
| Zm00001d046190_P001 | Maize | extracellular | 69.14 | 73.44 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 65.77 | 71.39 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 46.85 | 61.72 |
| GSMUA_Achr10P... | Banana | nucleus | 45.95 | 61.26 |
| Solyc03g121710.2.1 | Tomato | nucleus | 30.86 | 50.93 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 38.74 | 48.73 |
| CDY48318 | Canola | nucleus | 38.96 | 46.51 |
| CDY26229 | Canola | nucleus | 38.51 | 46.09 |
| PGSC0003DMT400006638 | Potato | nucleus | 39.86 | 45.85 |
| AT1G17640.1 | Thale cress | nucleus | 38.06 | 45.8 |
| KRH23293 | Soybean | nucleus | 35.59 | 44.76 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 32.66 | 41.79 |
| Solyc06g062740.1.1 | Tomato | cytosol | 18.02 | 40.61 |
| PGSC0003DMT400012372 | Potato | nucleus | 26.8 | 40.07 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 31.76 | 39.72 |
| PGSC0003DMT400012369 | Potato | nucleus | 33.11 | 33.64 |
| Solyc06g062730.1.1 | Tomato | nucleus | 26.8 | 32.43 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 29.73 | 29.07 |
| TraesCS1D01G237800.3 | Wheat | cytosol | 21.85 | 26.65 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 27.48 | 26.35 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 21.17 | 25.2 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 25.9 | 24.47 |
| TraesCS2D01G256500.1 | Wheat | nucleus | 20.5 | 24.33 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 12.39 | 22.09 |
| TraesCS5D01G415400.1 | Wheat | nucleus | 16.89 | 21.68 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 14.19 | 21.28 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 20.95 | 21.14 |
| TraesCS6D01G258900.4 | Wheat | plastid | 13.06 | 20.14 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 12.61 | 19.51 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 12.61 | 17.72 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 18.92 | 17.5 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 11.26 | 16.61 |
| TraesCS6D01G297300.1 | Wheat | plastid | 11.49 | 16.35 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 11.71 | 16.3 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 17.57 | 15.32 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G362200.1 | EnsemblPlantsGene:TraesCS7D01G362200 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | InterPro:Hrp1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil | PANTHER:PTHR45276 | PFAM:PF00076 | PFscan:PS50102 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:cd12330 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr7D:-:465332612..465341680
Molecular Weight (calculated)
46159.6 Da
IEP (calculated)
4.733
GRAVY (calculated)
-0.654
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYEEENLN AMNGYEEDEE VEEEVEEEVE EVEEEEEEEE RPAAEGSRDG GGGGEAVGSG EAGGVQGGRD VPAEPADGSG KIFVGGVAWE TTEEKFSKHF
101: QKYGAITDSV IMKDKHTGMP RGFGFVTFSD PSVIDRVLED EHTIDGRTVE VKRTVPREEM STKDAPNKTR KIFVGGIPAS LTEDKLKEHF SSYGKVAEHQ
201: IMVDHSTGRS RGFGFVTFES EDAVERVMSD GRMHDLGGKQ VEIKRAEPKK PGGGDSSSNS RHSHGGGGHR SSYRGGGGGG GGGRSAISSS SGYGYGADYR
301: SAAAAYYGSA GYGAYGRGYG AYGGNPAYGS GFGSAYGGSI YGGPYGAYGA YGGAYGGGAY GAPGGYGAGA GGYGGYGGAG SMGGGGSASG RGSGSRAVQL
401: SVDTYDVLLP SVNKWASPQL ADRMLDRWVE KFIRAITTIS HVNI
101: QKYGAITDSV IMKDKHTGMP RGFGFVTFSD PSVIDRVLED EHTIDGRTVE VKRTVPREEM STKDAPNKTR KIFVGGIPAS LTEDKLKEHF SSYGKVAEHQ
201: IMVDHSTGRS RGFGFVTFES EDAVERVMSD GRMHDLGGKQ VEIKRAEPKK PGGGDSSSNS RHSHGGGGHR SSYRGGGGGG GGGRSAISSS SGYGYGADYR
301: SAAAAYYGSA GYGAYGRGYG AYGGNPAYGS GFGSAYGGSI YGGPYGAYGA YGGAYGGGAY GAPGGYGAGA GGYGGYGGAG SMGGGGSASG RGSGSRAVQL
401: SVDTYDVLLP SVNKWASPQL ADRMLDRWVE KFIRAITTIS HVNI
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.