Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G266900.1 | Wheat | nucleus | 88.97 | 93.92 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 94.24 | 93.77 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 62.91 | 85.96 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 93.23 | 83.78 |
| EER88542 | Sorghum | nucleus | 77.94 | 75.12 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 76.69 | 74.09 |
| Zm00001d046190_P001 | Maize | extracellular | 75.94 | 72.49 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 52.63 | 62.31 |
| GSMUA_Achr10P... | Banana | nucleus | 51.88 | 62.16 |
| HORVU6Hr1G040220.5 | Barley | plastid | 71.68 | 61.64 |
| Solyc03g121710.2.1 | Tomato | nucleus | 35.09 | 52.04 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 43.86 | 49.58 |
| CDY48318 | Canola | nucleus | 43.36 | 46.51 |
| PGSC0003DMT400006638 | Potato | nucleus | 44.86 | 46.37 |
| CDY26229 | Canola | nucleus | 42.86 | 46.09 |
| AT1G17640.1 | Thale cress | nucleus | 42.36 | 45.8 |
| KRH23293 | Soybean | nucleus | 40.1 | 45.33 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 36.09 | 40.68 |
| Solyc06g062740.1.1 | Tomato | cytosol | 20.05 | 40.61 |
| PGSC0003DMT400012372 | Potato | nucleus | 28.57 | 38.38 |
| HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 6.02 | 35.82 |
| Solyc06g062730.1.1 | Tomato | nucleus | 30.08 | 32.7 |
| PGSC0003DMT400012369 | Potato | nucleus | 35.59 | 32.49 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 24.56 | 26.92 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 30.33 | 26.13 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 24.06 | 25.88 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 32.58 | 25.49 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 22.06 | 23.66 |
| HORVU6Hr1G070150.1 | Barley | plastid | 9.52 | 22.75 |
| HORVU6Hr1G070140.3 | Barley | plastid | 8.27 | 21.15 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 22.81 | 20.63 |
| HORVU6Hr1G054690.5 | Barley | plastid | 9.27 | 19.68 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 17.79 | 19.61 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 13.03 | 18.98 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 13.78 | 18.71 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 13.28 | 17.73 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 13.53 | 17.25 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 14.29 | 17.17 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 20.8 | 17.01 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 17.54 | 16.91 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 12.53 | 16.13 |
| HORVU6Hr1G078060.1 | Barley | plastid | 12.53 | 15.82 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 12.53 | 12.32 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G087550.1 | EnsemblPlantsGene:HORVU7Hr1G087550 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| ncoils:Coil | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000B482350 | UniProt:A0A287X7C6 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:527752783..527760817
Molecular Weight (calculated)
40764.2 Da
IEP (calculated)
4.894
GRAVY (calculated)
-0.768
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYEEENQD AMNGYEEDEE VEEEVEEEVE EEEEEERPTA DGARDGGGGG EVVGSGEAGG VQGGRDVPAE PADGSGKIFV GGVAWETTEE KFTKHFQKYG
101: AITDSVIMKD KHTGMPRGFG FVTFSDPSVI DRVLEDEHTI DGRTVEVKRT VPREEMSTKD APNKTRKIFV GGIPASLTED KLKEHFSSYG KVAEHQIMVD
201: HSTGRSRGFG FVTFESEDAV ERVMSDGRMH DLGGKQVEIK RAEPRKPGGG DSSSNSRHSH GGGGHRSSYR GGGGGSGGGR SMISSSSGYG HGADYRSAAA
301: AYYGSAGYGA YGRGYGAYGG NPAYGSGFGS AYGGSIYGGP YGAYGAYGGA YGGGAYGTPG GYGAGAGAGG XXXXGGTGSM GGGGSVSGRG SGRYHPYGK
101: AITDSVIMKD KHTGMPRGFG FVTFSDPSVI DRVLEDEHTI DGRTVEVKRT VPREEMSTKD APNKTRKIFV GGIPASLTED KLKEHFSSYG KVAEHQIMVD
201: HSTGRSRGFG FVTFESEDAV ERVMSDGRMH DLGGKQVEIK RAEPRKPGGG DSSSNSRHSH GGGGHRSSYR GGGGGSGGGR SMISSSSGYG HGADYRSAAA
301: AYYGSAGYGA YGRGYGAYGG NPAYGSGFGS AYGGSIYGGP YGAYGAYGGA YGGGAYGTPG GYGAGAGAGG XXXXGGTGSM GGGGSVSGRG SGRYHPYGK
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.