Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytoskeleton 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G480300.1 | Wheat | cytosol | 90.84 | 90.35 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 90.84 | 90.35 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 89.76 | 89.28 |
| KXG34100 | Sorghum | cytosol | 70.08 | 72.22 |
| Zm00001d011885_P008 | Maize | cytosol | 68.46 | 70.56 |
| Os01t0945800-01 | Rice | nucleus | 69.0 | 70.52 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 61.99 | 63.19 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 58.22 | 60.17 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 51.75 | 58.36 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 56.33 | 58.22 |
| PGSC0003DMT400010280 | Potato | cytosol | 55.26 | 55.26 |
| KRH28467 | Soybean | cytosol | 54.18 | 55.07 |
| KRH77004 | Soybean | nucleus | 53.64 | 54.97 |
| Solyc02g090910.2.1 | Tomato | nucleus | 55.53 | 54.79 |
| AT4G36960.2 | Thale cress | cytosol | 54.45 | 53.3 |
| CDY42724 | Canola | cytosol | 54.18 | 53.03 |
| CDY69852 | Canola | cytosol | 54.18 | 52.62 |
| Zm00001d042133_P003 | Maize | cytosol | 55.26 | 51.51 |
| Bra017802.1-P | Field mustard | nucleus | 53.37 | 48.53 |
| HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 6.2 | 34.33 |
| CDX69279 | Canola | nucleus | 19.68 | 30.93 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 25.88 | 24.06 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 20.75 | 21.75 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 21.29 | 21.24 |
| HORVU6Hr1G040220.5 | Barley | plastid | 26.42 | 21.12 |
| HORVU6Hr1G070150.1 | Barley | plastid | 9.43 | 20.96 |
| HORVU6Hr1G054690.5 | Barley | plastid | 10.51 | 20.74 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 24.8 | 19.87 |
| HORVU6Hr1G070140.3 | Barley | plastid | 7.82 | 18.59 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 17.52 | 17.96 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 23.72 | 17.25 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 13.75 | 17.06 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 12.94 | 16.33 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 19.14 | 16.1 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 17.79 | 15.94 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 11.32 | 15.33 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 12.67 | 15.02 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 12.94 | 14.46 |
| HORVU6Hr1G078060.1 | Barley | plastid | 11.86 | 13.92 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 17.25 | 13.11 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 10.78 | 12.9 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 11.05 | 10.1 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G105930.10 | EnsemblPlantsGene:HORVU3Hr1G105930 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45519 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000B473519 | UniProt:A0A287MK16 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:670282555..670287762
Molecular Weight (calculated)
40474.7 Da
IEP (calculated)
7.197
GRAVY (calculated)
-0.522
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTKLVVFGL PWDVDSEGLR KHMAKFGPLE DCVVMKDRLS GRSRGFGYVT FSSADDVQNV LEFKHFLRNR ALEVKIATPR EEMKPQPQGT KTATRIFVGR
101: IPQSADESMF RRHFEAFGEI IDLYMPKEHG SKGHRGIGFI TFQSAESVDS IMQESHELDG TTLHVDHATP KDEDIRHPPS RAFQDGGDYG LGYGAYDVYI
201: AATTMFGAVG PPTRYDHQGP AYGRGYSGSP QGIGKKIFVG GLPQGAKKDD LRNYFGGFGG VADVFIPRDP KGSGHRGFGF VTFSDEGVAD NIADKSHEIL
301: GCKVIVDIAA PPRGDSSGRF TDPMPGVDLN APPYGSMRPF GMFCGNLGYD QGYGPSGSGS RSRTDGRHRP Y
101: IPQSADESMF RRHFEAFGEI IDLYMPKEHG SKGHRGIGFI TFQSAESVDS IMQESHELDG TTLHVDHATP KDEDIRHPPS RAFQDGGDYG LGYGAYDVYI
201: AATTMFGAVG PPTRYDHQGP AYGRGYSGSP QGIGKKIFVG GLPQGAKKDD LRNYFGGFGG VADVFIPRDP KGSGHRGFGF VTFSDEGVAD NIADKSHEIL
301: GCKVIVDIAA PPRGDSSGRF TDPMPGVDLN APPYGSMRPF GMFCGNLGYD QGYGPSGSGS RSRTDGRHRP Y
001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
Arabidopsis Description
AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.