Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g090910.2.1 | Tomato | nucleus | 98.92 | 97.61 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 78.71 | 81.34 |
| KRH77004 | Soybean | nucleus | 76.01 | 77.9 |
| KRH28467 | Soybean | cytosol | 75.74 | 76.99 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 67.39 | 75.99 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 70.89 | 73.26 |
| AT4G36960.2 | Thale cress | cytosol | 71.43 | 69.92 |
| CDY42724 | Canola | cytosol | 71.16 | 69.66 |
| Zm00001d011885_P008 | Maize | cytosol | 67.12 | 69.17 |
| Os01t0945800-01 | Rice | nucleus | 67.66 | 69.15 |
| CDY69852 | Canola | cytosol | 71.16 | 69.11 |
| KXG34100 | Sorghum | cytosol | 66.04 | 68.06 |
| Bra017802.1-P | Field mustard | nucleus | 69.81 | 63.48 |
| Os05t0376000-00 | Rice | cytosol | 35.58 | 63.16 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 61.73 | 62.91 |
| TraesCS1B01G249300.1 | Wheat | cytosol | 61.46 | 62.47 |
| TraesCS1D01G237800.3 | Wheat | cytosol | 61.19 | 62.36 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 61.19 | 62.19 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 56.6 | 56.3 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 56.33 | 56.03 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 56.06 | 55.76 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 55.26 | 55.26 |
| Zm00001d042133_P003 | Maize | cytosol | 56.06 | 52.26 |
| CDX69279 | Canola | nucleus | 24.8 | 38.98 |
| PGSC0003DMT400012586 | Potato | nucleus | 23.45 | 25.29 |
| PGSC0003DMT400012372 | Potato | nucleus | 20.22 | 25.25 |
| PGSC0003DMT400044868 | Potato | nucleus | 23.18 | 25.15 |
| PGSC0003DMT400006638 | Potato | nucleus | 24.8 | 23.83 |
| PGSC0003DMT400035000 | Potato | nucleus | 28.03 | 23.53 |
| PGSC0003DMT400032811 | Potato | nucleus | 24.53 | 23.39 |
| PGSC0003DMT400009762 | Potato | nucleus | 24.26 | 22.67 |
| PGSC0003DMT400074192 | Potato | nucleus | 28.57 | 22.36 |
| PGSC0003DMT400044195 | Potato | nucleus | 28.03 | 21.89 |
| PGSC0003DMT400076643 | Potato | nucleus | 27.76 | 21.73 |
| PGSC0003DMT400034757 | Potato | nucleus | 27.22 | 21.58 |
| PGSC0003DMT400037271 | Potato | nucleus | 26.95 | 21.28 |
| PGSC0003DMT400060554 | Potato | nucleus | 25.88 | 20.43 |
| PGSC0003DMT400012369 | Potato | nucleus | 23.45 | 19.91 |
| PGSC0003DMT400008944 | Potato | nucleus | 14.02 | 19.7 |
| PGSC0003DMT400025900 | Potato | nucleus | 13.75 | 17.77 |
| PGSC0003DMT400031324 | Potato | cytosol | 6.47 | 17.27 |
| PGSC0003DMT400039802 | Potato | nucleus | 20.49 | 17.04 |
| PGSC0003DMT400032256 | Potato | nucleus | 14.29 | 16.99 |
| PGSC0003DMT400044866 | Potato | extracellular | 23.18 | 16.1 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 11.86 | 15.6 |
| PGSC0003DMT400027411 | Potato | nucleus | 10.51 | 15.35 |
| PGSC0003DMT400008213 | Potato | nucleus | 17.52 | 15.33 |
| PGSC0003DMT400058431 | Potato | nucleus | 18.6 | 14.08 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 13.48 | 13.74 |
| PGSC0003DMT400072501 | Potato | nucleus | 14.29 | 12.86 |
| PGSC0003DMT400016249 | Potato | nucleus | 16.44 | 12.4 |
| PGSC0003DMT400008583 | Potato | nucleus | 18.87 | 11.71 |
Protein Annotations
| EntrezGene:102591610 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0ZXT0 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG401004019 | PGSC:PGSC0003DMG401004019 | EnsemblPlants:PGSC0003DMT400010280 | PFscan:PS50102 | PANTHER:PTHR45519 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295A7F4 | RefSeq:XP_006339894.1 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401004019]
Coordinates
chr2:+:43785935..43794265
Molecular Weight (calculated)
40919.4 Da
IEP (calculated)
7.667
GRAVY (calculated)
-0.595
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MSERKLVVLG IPWDVDTEGL REYMIKYGDL EDCIVMKERA TGRSRGFGYV TFATVEDAKN ALSKEHFLGN RMLEVKVATP KEEMRAPAKK VTRIFVARIP
101: PSVSEATFRG YFEKYGEITD LYMPKDPSTK GHRGIGFITF ANAESVDDLM NDTHELGGST IVVDRATPKE EDFRPVSRMS QGGGGYGAYN AYMSATTRYG
201: ALGAPTLYDH PSSMYGRGGG GGGFPSRGGM GQKIFVGRLP QEATTEDLRQ YFGRFGRVLD VYVPKDPRRP GHRGFGFVTF ADDGVADRVS RRPHEICGHQ
301: VAIDSATPLD DAGPSNNYMM DPPPPAPEAY GGYGGPMRTY GRMYGGLDYD DWGYGLGGGR PSRSDMRYRP Y
101: PSVSEATFRG YFEKYGEITD LYMPKDPSTK GHRGIGFITF ANAESVDDLM NDTHELGGST IVVDRATPKE EDFRPVSRMS QGGGGYGAYN AYMSATTRYG
201: ALGAPTLYDH PSSMYGRGGG GGGFPSRGGM GQKIFVGRLP QEATTEDLRQ YFGRFGRVLD VYVPKDPRRP GHRGFGFVTF ADDGVADRVS RRPHEICGHQ
301: VAIDSATPLD DAGPSNNYMM DPPPPAPEAY GGYGGPMRTY GRMYGGLDYD DWGYGLGGGR PSRSDMRYRP Y
001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
Arabidopsis Description
AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.