Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g008970.2.1 | Tomato | nucleus | 70.0 | 91.22 |
| KRH14673 | Soybean | nucleus | 57.55 | 57.09 |
| KRH73477 | Soybean | nucleus | 57.35 | 56.65 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 55.92 | 52.9 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 48.37 | 50.86 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 43.47 | 46.92 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 42.45 | 45.92 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 44.49 | 45.42 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 44.69 | 44.88 |
| EES02736 | Sorghum | plastid | 42.45 | 44.83 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 43.88 | 44.79 |
| Os01t0265800-01 | Rice | nucleus | 43.88 | 43.88 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 38.57 | 43.55 |
| PGSC0003DMT400072501 | Potato | nucleus | 32.04 | 38.11 |
| GSMUA_Achr10P... | Banana | nucleus | 17.35 | 36.8 |
| HORVU6Hr1G054690.5 | Barley | plastid | 12.86 | 33.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.78 | 32.87 |
| KXG30578 | Sorghum | nucleus | 24.49 | 32.26 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 28.98 | 32.13 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 26.53 | 31.4 |
| PGSC0003DMT400032256 | Potato | nucleus | 19.8 | 31.09 |
| PGSC0003DMT400008213 | Potato | nucleus | 26.73 | 30.9 |
| Os02t0602600-00 | Rice | nucleus | 24.29 | 30.83 |
| Zm00001d002141_P006 | Maize | nucleus | 32.24 | 30.33 |
| PGSC0003DMT400016249 | Potato | nucleus | 30.41 | 30.28 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 31.84 | 29.94 |
| Os04t0636900-02 | Rice | nucleus | 31.43 | 29.9 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 31.02 | 29.86 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 31.02 | 29.86 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 31.02 | 29.86 |
| PGSC0003DMT400039802 | Potato | nucleus | 27.14 | 29.82 |
| PGSC0003DMT400031324 | Potato | cytosol | 8.37 | 29.5 |
| EES12939 | Sorghum | nucleus | 31.63 | 29.41 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 20.0 | 26.92 |
| EES10068 | Sorghum | nucleus | 22.65 | 25.75 |
| PGSC0003DMT400006638 | Potato | nucleus | 17.96 | 22.8 |
| PGSC0003DMT400044868 | Potato | nucleus | 15.71 | 22.51 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 18.57 | 22.41 |
| PGSC0003DMT400025900 | Potato | nucleus | 12.65 | 21.6 |
| PGSC0003DMT400012372 | Potato | nucleus | 12.45 | 20.54 |
| PGSC0003DMT400008944 | Potato | nucleus | 11.02 | 20.45 |
| PGSC0003DMT400032811 | Potato | nucleus | 15.51 | 19.54 |
| PGSC0003DMT400027411 | Potato | nucleus | 10.0 | 19.29 |
| PGSC0003DMT400010280 | Potato | cytosol | 14.08 | 18.6 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 10.61 | 18.44 |
| PGSC0003DMT400012369 | Potato | nucleus | 15.92 | 17.85 |
| PGSC0003DMT400009762 | Potato | nucleus | 13.67 | 16.88 |
| PGSC0003DMT400074192 | Potato | nucleus | 16.12 | 16.67 |
| PGSC0003DMT400012586 | Potato | nucleus | 11.63 | 16.57 |
| PGSC0003DMT400037271 | Potato | nucleus | 15.51 | 16.17 |
| PGSC0003DMT400076643 | Potato | nucleus | 15.31 | 15.82 |
| PGSC0003DMT400035000 | Potato | nucleus | 13.88 | 15.38 |
| PGSC0003DMT400060554 | Potato | nucleus | 14.69 | 15.32 |
| PGSC0003DMT400034757 | Potato | nucleus | 14.08 | 14.74 |
| PGSC0003DMT400044195 | Potato | nucleus | 14.29 | 14.74 |
| PGSC0003DMT400044866 | Potato | extracellular | 15.51 | 14.23 |
| PGSC0003DMT400008583 | Potato | nucleus | 11.22 | 9.2 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1C2M2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| EnsemblPlantsGene:PGSC0003DMG400022692 | PGSC:PGSC0003DMG400022692 | EnsemblPlants:PGSC0003DMT400058431 | PFscan:PS50102 | PANTHER:PTHR44578 | PANTHER:PTHR44578:SF4 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002967E13 | SEG:seg |
Description
RNA-binding protein AKIP1 [Source:PGSC_GENE;Acc:PGSC0003DMG400022692]
Coordinates
chr1:-:5385376..5389514
Molecular Weight (calculated)
53205.4 Da
IEP (calculated)
4.689
GRAVY (calculated)
-0.893
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKRKTRAS EPSQPVEEPV EIKQEPEVET AQEEEYENDA VEVEEEEAVH EDEEEQDPEE EDEEGGDDEE EEEEMPGSGN DAVEDDNEKS VNEQEQVNGG
101: AEVKMEEGNE EDLEDEPLEN LLEPFTKDQL TALIKEALAK YPDFKENIQK LADKDPAHRK IFVHGLGWDT TAETLTSVFA TYGEIEDCKA VTDKVSGKSK
201: GYGFILFKHR SGARKALKEP QKKIGTRMTS CQLASAGPVP APPPTTATPP VSEYTQRKIF VSNVAADLEP QKLLEYFSKF GEVEEGPLGL DKQSGKPKGF
301: CLFVYKTVEG ARKALEEPHK TFEGHTLHCQ KAIDGPKHSK NFHQQQQPQS QQHYPQHHHH NQQQHYYQHP AKKGKYSGSS AGAGSAGHLM APSGPAPVGY
401: NPAVAAVTPA LGQALTALLA TQGAGLGIGN LLGGLGGPVN HQGVQPVVNN ATGYGAQGGY GAQPHMQYQP QMQGGARPQG GAPYSGYGGH
101: AEVKMEEGNE EDLEDEPLEN LLEPFTKDQL TALIKEALAK YPDFKENIQK LADKDPAHRK IFVHGLGWDT TAETLTSVFA TYGEIEDCKA VTDKVSGKSK
201: GYGFILFKHR SGARKALKEP QKKIGTRMTS CQLASAGPVP APPPTTATPP VSEYTQRKIF VSNVAADLEP QKLLEYFSKF GEVEEGPLGL DKQSGKPKGF
301: CLFVYKTVEG ARKALEEPHK TFEGHTLHCQ KAIDGPKHSK NFHQQQQPQS QQHYPQHHHH NQQQHYYQHP AKKGKYSGSS AGAGSAGHLM APSGPAPVGY
401: NPAVAAVTPA LGQALTALLA TQGAGLGIGN LLGGLGGPVN HQGVQPVVNN ATGYGAQGGY GAQPHMQYQP QMQGGARPQG GAPYSGYGGH
001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
Arabidopsis Description
UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.