Factsheet for PGSC0003DMT400044868

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g045240.2.1	Tomato	nucleus	98.25	97.96
KRH17717	Soybean	nucleus	71.34	69.32
VIT_12s0057g01280.t01	Wine grape	nucleus	51.75	68.6
PGSC0003DMT400044866	Potato	extracellular	99.71	63.86
GSMUA_Achr1P19260_001	Banana	nucleus	62.28	63.02
GSMUA_AchrUn_...	Banana	cytosol	59.94	62.31
GSMUA_Achr1P09440_001	Banana	cytosol	60.82	61.36
Os08t0320100-01	Rice	nucleus	61.4	60.0
EES01076	Sorghum	nucleus	61.11	59.89
AT3G13224.2	Thale cress	nucleus	62.57	59.78
CDY24201	Canola	nucleus	63.16	59.67
Bra039380.1-P	Field mustard	nucleus	62.87	59.39
CDY43360	Canola	nucleus	62.87	59.39
Zm00001d030579_P001	Maize	mitochondrion	59.94	58.91
TraesCS6D01G272500.1	Wheat	nucleus	56.73	55.91
TraesCS6A01G291100.1	Wheat	nucleus	54.68	54.84
GSMUA_Achr8P25380_001	Banana	nucleus	60.53	54.62
TraesCS6B01G321300.2	Wheat	nucleus	56.73	52.01
PGSC0003DMT400032811	Potato	nucleus	58.48	51.41
HORVU7Hr1G060930.1	Barley	plasma membrane	53.22	51.41
TraesCS7A01G282600.1	Wheat	cytosol	51.75	50.57
TraesCS7B01G178300.1	Wheat	nucleus	52.34	50.28
TraesCS7D01G281300.1	Wheat	nucleus	51.75	49.86
Zm00001d052820_P001	Maize	extracellular, mitochondrion, plasma membrane	55.26	49.35
GSMUA_Achr9P12880_001	Banana	cytosol	31.87	47.39
OQU81002	Sorghum	nucleus	39.77	40.6
PGSC0003DMT400006638	Potato	nucleus	41.23	36.53
PGSC0003DMT400012372	Potato	nucleus	29.53	34.01
PGSC0003DMT400012369	Potato	nucleus	38.89	30.43
Os08t0492100-02	Rice	nucleus	37.72	29.59
PGSC0003DMT400035000	Potato	nucleus	37.43	28.96
PGSC0003DMT400012586	Potato	nucleus	28.95	28.78
PGSC0003DMT400044195	Potato	nucleus	38.89	28.0
PGSC0003DMT400074192	Potato	nucleus	37.43	27.0
PGSC0003DMT400009762	Potato	nucleus	30.7	26.45
PGSC0003DMT400034757	Potato	nucleus	35.09	25.64
PGSC0003DMT400076643	Potato	nucleus	35.09	25.32
PGSC0003DMT400037271	Potato	nucleus	34.5	25.11
PGSC0003DMT400060554	Potato	nucleus	33.04	24.04
PGSC0003DMT400010280	Potato	cytosol	25.15	23.18
PGSC0003DMT400008944	Potato	nucleus	16.67	21.59
PGSC0003DMT400025900	Potato	nucleus	17.25	20.56
PGSC0003DMT400027411	Potato	nucleus	14.62	19.68
PGSC0003DMT400032256	Potato	nucleus	17.54	19.23
PGSC0003DMT400031324	Potato	cytosol	7.31	17.99
PGSC0003DMT400035478	Potato	nucleus, plastid	14.62	17.73
PGSC0003DMT400008213	Potato	nucleus	21.64	17.45
PGSC0003DMT400039802	Potato	nucleus	22.51	17.26
PGSC0003DMT400031418	Potato	extracellular, golgi	18.13	17.03
PGSC0003DMT400016249	Potato	nucleus	23.39	16.26
PGSC0003DMT400058431	Potato	nucleus	22.51	15.71
PGSC0003DMT400072501	Potato	nucleus	18.71	15.53
PGSC0003DMT400008583	Potato	nucleus	23.68	13.55

Protein Annotations

EntrezGene:102605451	EntrezGene:102605795	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1BGT4	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG402017409	PGSC:PGSC0003DMG402017409	EnsemblPlants:PGSC0003DMT400044868	PFscan:PS50102	PANTHER:PTHR45276
PANTHER:PTHR45276:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295AC14
RefSeq:XP_006357668.1	RefSeq:XP_006357669.1	SEG:seg	:	:	:

Description

Heterogeneous nuclear ribonucleoprotein A1 [Source:PGSC_GENE;Acc:PGSC0003DMG402017409]

Coordinates

chr7:+:43247964..43251562

Molecular Weight (calculated)

36362.8 Da

IEP (calculated)

9.144

GRAVY (calculated)

-0.671

Length

342 amino acids

Sequence
(BLAST)

001: MGSRKNDFGD GASPGKIFIG GLAKETTREQ FVKYFEKYGE IIDSVIMKDR QTGRPRGFGF ITFADPTVVD TVIAENHIIN DKQVEIKRTI PKGSADSKDF
101: KTRKIFVGGI PTTMTEDEFK NFFSKFGKVT EYEIIRDHVS KRSRGFGFIV FDNEEVVDNL LAEGNRMDMM GTQVEIKKAE PKKPSNPASA PAYGSNSRGR
201: GYGDSYGGFA DSYSGYDSGG FGPASYRSFG SRYGDYGYGG RYGDFGSSEF GGYRGDPSLG YSSRFGSYAG GYGGGYSSSG LGAYGRGGGY GGYGGAGPGA
301: GYESGPGAAY ESGTGAGYGG SGGLYGSRGG YSGSGRYHPY SR

Best Arabidopsis Sequence Match ( AT3G13224.2 )
(BLAST)

001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.