Factsheet for Os08t0320100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 19621931
cytosol: 19685898
nucleus: 26035336

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01076	Sorghum	nucleus	87.14	87.39
Zm00001d030579_P001	Maize	mitochondrion	84.57	85.06
TraesCS6D01G272500.1	Wheat	nucleus	76.57	77.23
TraesCS6A01G291100.1	Wheat	nucleus	74.86	76.83
TraesCS6B01G321300.2	Wheat	nucleus	76.0	71.31
GSMUA_Achr1P19260_001	Banana	nucleus	66.0	68.34
GSMUA_AchrUn_...	Banana	cytosol	63.43	67.48
GSMUA_Achr1P09440_001	Banana	cytosol	64.57	66.67
VIT_19s0015g00920.t01	Wine grape	nucleus	64.0	64.37
PGSC0003DMT400044868	Potato	nucleus	60.0	61.4
GSMUA_Achr8P25380_001	Banana	nucleus	66.29	61.21
VIT_18s0117g00150.t01	Wine grape	nucleus	62.57	61.0
Solyc07g045240.2.1	Tomato	nucleus	59.43	60.64
KRH17717	Soybean	nucleus	60.86	60.51
VIT_12s0057g01280.t01	Wine grape	nucleus	41.71	56.59
AT3G13224.2	Thale cress	nucleus	57.71	56.42
CDY24201	Canola	nucleus	57.43	55.52
Bra039380.1-P	Field mustard	nucleus	56.86	54.97
CDY43360	Canola	nucleus	56.86	54.97
Os06t0566100-01	Rice	cytosol, nucleus	39.71	47.6
Os02t0221500-01	Rice	nucleus	45.14	39.8
PGSC0003DMT400044866	Potato	extracellular	59.71	39.14
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	33.71	31.81
Os08t0492100-02	Rice	nucleus	39.43	31.65
Os11t0637700-01	Rice	plasma membrane	38.29	28.69
Os07t0584500-01	Rice	nucleus	34.29	25.42
Os07t0124600-01	Rice	nucleus	25.43	23.61
Os01t0945800-01	Rice	nucleus	24.0	23.14
Os05t0376000-00	Rice	cytosol	13.71	22.97
Os02t0755400-01	Rice	plastid	10.57	21.02
Os01t0876800-00	Rice	nucleus	16.57	19.33
Os06t0622900-01	Rice	cytosol, mitochondrion, nucleus	14.29	18.18
Os01t0958500-01	Rice	nucleus	15.71	17.74
Os02t0714000-01	Rice	nucleus, plastid	14.0	17.07
Os01t0614500-01	Rice	nucleus	21.71	17.0
Os01t0265800-01	Rice	nucleus	22.57	16.12
Os03t0286500-01	Rice	cytosol, nucleus, plastid	14.0	15.81
Os06t0220600-01	Rice	plastid	13.71	13.99
Os02t0602600-00	Rice	nucleus	13.14	11.92
Os04t0636900-02	Rice	nucleus	17.14	11.65

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4345254	EMBL:AK121802	ProteinID:BAC92448.1	ProteinID:BAD10426.1
ProteinID:BAF23439.1	ProteinID:BAT04866.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os08g0320100	EnsemblPlants:Os08t0320100-01	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45276	PANTHER:PTHR45276:SF1	UniProt:Q6Z0P6	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00001D1B70	RefSeq:XP_015651001.1	SEG:seg	:

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os08t0320100-01);Hypothetical conserved gene. (Os08t0320100-02)

Coordinates

chr8:+:13930625..13934574

Molecular Weight (calculated)

36740.7 Da

IEP (calculated)

9.600

GRAVY (calculated)

-0.579

Length

350 amino acids

Sequence
(BLAST)

001: MAGGKMKEHD GASPAKIFIG GLPKDTTMGT FKEYFGKYGE IVDAVIMKDR FTQKPRGFGF ITFADPAVVD RVIEDNHVIN GKEVEIKRTI PKGAAPLKDF
101: KTKKIFVGGL PSALKEDEFK EFFSKFGKVV EHEIIRDHST NRSRGFGFVV FDAEKTVDEL LAKKGNMIDL NGSQVEIKKA EPKKPSNPPH RSFDSEPRGR
201: PHADGYDGLG NSYNYGGSFG PYRSPGSFGT RPGGYSSSYG PGDYGSGYGA YGGALGGYRG ESSLYSSRFG STYGGSFGGG YAGGSYAGGL GGAYGRDAGG
301: FGGSSYGPSY DSSSGPGAGV GFGTGGLYGA RGGYGSSGAG ASGRYHPYAR

Best Arabidopsis Sequence Match ( AT3G13224.2 )
(BLAST)

001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.