Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 7
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G180800.1 | Wheat | nucleus | 58.31 | 66.45 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 57.73 | 66.0 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 57.14 | 65.55 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 58.02 | 65.46 |
| Zm00001d037209_P001 | Maize | plastid | 60.06 | 62.05 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 31.78 | 61.58 |
| Os02t0755400-01 | Rice | plastid | 30.61 | 59.66 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 27.41 | 59.12 |
| OQU76075 | Sorghum | plastid | 59.48 | 57.79 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 34.69 | 50.42 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 38.19 | 49.62 |
| AT5G53720.1 | Thale cress | cytosol | 13.7 | 47.0 |
| CDY51790 | Canola | cytosol | 14.58 | 46.73 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 14.58 | 44.64 |
| PGSC0003DMT400025900 | Potato | nucleus | 32.36 | 38.68 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 26.82 | 38.17 |
| Os02t0714000-01 | Rice | nucleus, plastid | 31.2 | 37.28 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 29.15 | 36.36 |
| KRH53608 | Soybean | nucleus | 24.49 | 34.15 |
| AT5G53680.1 | Thale cress | cytosol | 16.33 | 33.14 |
| Os01t0876800-00 | Rice | nucleus | 28.57 | 32.67 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 16.62 | 32.57 |
| Os01t0958500-01 | Rice | nucleus | 28.86 | 31.94 |
| KRH64318 | Soybean | nucleus | 23.91 | 31.91 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 26.82 | 29.68 |
| Bra029612.1-P | Field mustard | nucleus | 13.99 | 16.72 |
| AT3G06970.1 | Thale cress | nucleus | 14.87 | 16.09 |
| CDY05301 | Canola | nucleus | 14.87 | 14.53 |
| CDY24657 | Canola | nucleus | 14.29 | 14.41 |
| Os01t0614500-01 | Rice | nucleus | 18.37 | 14.09 |
| Os08t0320100-01 | Rice | nucleus | 13.99 | 13.71 |
| CDY08023 | Canola | nucleus | 13.99 | 13.33 |
| Os02t0221500-01 | Rice | nucleus | 15.16 | 13.1 |
| CDX74070 | Canola | cytosol | 13.7 | 13.06 |
| Os02t0602600-00 | Rice | nucleus | 14.58 | 12.95 |
| Bra001228.1-P | Field mustard | cytosol | 13.41 | 12.71 |
| Os01t0945800-01 | Rice | nucleus | 12.83 | 12.12 |
| Os07t0584500-01 | Rice | nucleus | 16.62 | 12.08 |
| Os07t0124600-01 | Rice | nucleus | 13.12 | 11.94 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 9.91 | 11.64 |
| Os04t0636900-02 | Rice | nucleus | 16.91 | 11.26 |
| Os01t0265800-01 | Rice | nucleus | 15.74 | 11.02 |
| Os11t0637700-01 | Rice | plasma membrane | 14.58 | 10.71 |
| Os05t0376000-00 | Rice | cytosol | 5.83 | 9.57 |
| Os08t0492100-02 | Rice | nucleus | 10.79 | 8.49 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4340517 | EMBL:AK058664 | ProteinID:BAD37252.1 | ProteinID:BAD37669.1 |
| ProteinID:BAS96826.1 | ProteinID:EAZ36303.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os06g0220600 | EnsemblPlants:Os06t0220600-01 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44828 | UniProt:Q67W00 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000042620B | RefSeq:XP_015643976.1 | SEG:seg | : | : |
Description
RNA recognition motif domain domain containing protein. (Os06t0220600-01)
Coordinates
chr6:-:6208419..6214434
Molecular Weight (calculated)
36172.8 Da
IEP (calculated)
9.787
GRAVY (calculated)
-0.374
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAAPSS STSGSPGAAA AAARPTMPYR SRFGDTTLTK VFVGGLAWET PSEGLRRHFE QYGEILEAVV IADRLTGRSK GYGFVTFREA EAARRAVQDP
101: NPMIAGRRAN CNIASLGPPR PAQPPRGRAS PGAQFQAPPP AFQGPPYIAR GTPPPPAQMM PQPQHHGPPA TIYHPSQSWY WYPPDYQYQQ GLMNSQVLQS
201: YYAAALQAQA QAQAQLYGMA ASPTAPSPYQ YLGYMPAPAP AVTPTAVLPP AQQQITGPPP PFVQQPAQHV TAPPPFVHHP TAAAQIQGSF VPLPSLPHNF
301: RLQLPPNAMS ILPPTPTALQ PADLQAAPAA TGATNPNNTP TGA
101: NPMIAGRRAN CNIASLGPPR PAQPPRGRAS PGAQFQAPPP AFQGPPYIAR GTPPPPAQMM PQPQHHGPPA TIYHPSQSWY WYPPDYQYQQ GLMNSQVLQS
201: YYAAALQAQA QAQAQLYGMA ASPTAPSPYQ YLGYMPAPAP AVTPTAVLPP AQQQITGPPP PFVQQPAQHV TAPPPFVHHP TAAAQIQGSF VPLPSLPHNF
301: RLQLPPNAMS ILPPTPTALQ PADLQAAPAA TGATNPNNTP TGA
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.