Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G178700.2 | Wheat | nucleus | 95.02 | 94.08 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 93.36 | 93.67 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 86.05 | 86.62 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 31.23 | 59.12 |
| Os06t0220600-01 | Rice | plastid | 66.45 | 58.31 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 33.89 | 57.63 |
| Zm00001d037209_P001 | Maize | plastid | 62.13 | 56.33 |
| OQU76075 | Sorghum | plastid | 65.12 | 55.52 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 39.2 | 50.0 |
| AT5G53720.1 | Thale cress | cytosol | 15.95 | 48.0 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 41.2 | 46.97 |
| CDY51790 | Canola | cytosol | 16.28 | 45.79 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 16.61 | 44.64 |
| TraesCS6D01G297300.1 | Wheat | plastid | 46.18 | 44.55 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 28.9 | 36.1 |
| PGSC0003DMT400025900 | Potato | nucleus | 33.22 | 34.84 |
| TraesCS6D01G258900.4 | Wheat | plastid | 33.22 | 34.72 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 32.89 | 34.49 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 19.6 | 33.71 |
| KRH53608 | Soybean | nucleus | 27.24 | 33.33 |
| AT5G53680.1 | Thale cress | cytosol | 18.6 | 33.14 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 26.58 | 32.13 |
| KRH64318 | Soybean | nucleus | 26.58 | 31.13 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 30.23 | 30.74 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 31.23 | 29.75 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 30.23 | 28.53 |
| AT3G06970.1 | Thale cress | nucleus | 17.28 | 16.4 |
| Bra029612.1-P | Field mustard | nucleus | 15.61 | 16.38 |
| CDY05301 | Canola | nucleus | 16.94 | 14.53 |
| CDY24657 | Canola | nucleus | 16.28 | 14.41 |
| CDY08023 | Canola | nucleus | 15.95 | 13.33 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 19.27 | 13.18 |
| TraesCS1D01G237800.3 | Wheat | cytosol | 15.61 | 12.91 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 15.95 | 12.87 |
| CDX74070 | Canola | cytosol | 15.28 | 12.78 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 14.62 | 12.68 |
| Bra001228.1-P | Field mustard | cytosol | 14.95 | 12.43 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 18.94 | 11.88 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 13.95 | 11.83 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 15.61 | 11.49 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 16.61 | 11.26 |
| TraesCS2D01G256500.1 | Wheat | nucleus | 13.95 | 11.23 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 17.28 | 11.06 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 16.61 | 10.8 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 15.95 | 10.57 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 17.61 | 10.41 |
| TraesCS5D01G415400.1 | Wheat | nucleus | 11.3 | 9.83 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G180800.1 | EnsemblPlantsGene:TraesCS7D01G180800 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44828 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:cd12384 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:134174337..134178654
Molecular Weight (calculated)
32351.1 Da
IEP (calculated)
9.310
GRAVY (calculated)
-0.518
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASSSTASS YRSRFGDTTQ TKVFVGGLAW ETPSEGLRQH FEQYGDILEA VVITDRLTGR SKGYGFVTFR EAEAARRAVQ DPNPTITGRR ANCNIASLGP
101: PRPAHPRGRP SPGPYWQQGP PAPVPPQGPH YYIPSPRAPP QQQQQMGLMP SPGPAIYHQP PSQPWYWCPP DYQYPQAMMT PQMMQNYYAQ LYAAGLASPT
201: GPPPYHQYVG YMQAPTPRAA VLSPVAQQIA AGQPYVPHPA AAQMQGFSMQ VPSLPHNFAL QLPSHAVSLL PPNATDVQSA GGQASSSAAA ATNANITHQG
301: A
101: PRPAHPRGRP SPGPYWQQGP PAPVPPQGPH YYIPSPRAPP QQQQQMGLMP SPGPAIYHQP PSQPWYWCPP DYQYPQAMMT PQMMQNYYAQ LYAAGLASPT
201: GPPPYHQYVG YMQAPTPRAA VLSPVAQQIA AGQPYVPHPA AAQMQGFSMQ VPSLPHNFAL QLPSHAVSLL PPNATDVQSA GGQASSSAAA ATNANITHQG
301: A
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.