Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001228.1-P | Field mustard | cytosol | 93.06 | 92.54 |
| CDY08023 | Canola | nucleus | 83.33 | 83.33 |
| CDY51790 | Canola | cytosol | 13.89 | 46.73 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 13.89 | 44.64 |
| CDY05301 | Canola | nucleus | 41.94 | 43.02 |
| CDY24657 | Canola | nucleus | 40.28 | 42.65 |
| AT3G06970.1 | Thale cress | nucleus | 35.83 | 40.69 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 12.78 | 30.46 |
| HORVU6Hr1G070140.3 | Barley | plastid | 12.22 | 28.21 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 12.22 | 27.67 |
| HORVU6Hr1G070150.1 | Barley | plastid | 12.78 | 27.54 |
| Zm00001d052212_P001 | Maize | nucleus | 11.94 | 26.71 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 13.06 | 26.55 |
| Os02t0755400-01 | Rice | plastid | 12.5 | 25.57 |
| KRH64318 | Soybean | nucleus | 16.67 | 23.35 |
| KRH53608 | Soybean | nucleus | 15.83 | 23.17 |
| CDY69197 | Canola | nucleus | 13.89 | 22.22 |
| CDX73279 | Canola | cytosol | 14.72 | 21.9 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 15.0 | 21.69 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 15.0 | 21.69 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 14.44 | 21.58 |
| CDY31508 | Canola | nucleus | 14.72 | 21.2 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 13.89 | 21.19 |
| CDY31859 | Canola | nucleus | 14.17 | 21.16 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 14.17 | 21.16 |
| CDY04769 | Canola | nucleus | 13.89 | 21.1 |
| CDY25759 | Canola | nucleus | 14.44 | 20.88 |
| CDY01349 | Canola | nucleus | 13.89 | 20.75 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 16.67 | 20.69 |
| CDX96615 | Canola | nucleus | 14.17 | 20.24 |
| Os02t0714000-01 | Rice | nucleus, plastid | 16.11 | 20.21 |
| CDY33653 | Canola | nucleus | 14.17 | 20.16 |
| CDY29496 | Canola | nucleus | 14.44 | 19.92 |
| PGSC0003DMT400025900 | Potato | nucleus | 15.83 | 19.86 |
| TraesCS6D01G258900.4 | Wheat | plastid | 15.56 | 19.44 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 14.72 | 19.41 |
| CDY02889 | Canola | nucleus | 11.67 | 19.35 |
| OQU85520 | Sorghum | nucleus, plastid | 15.83 | 19.32 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 14.17 | 19.32 |
| TraesCS6B01G306600.1 | Wheat | plastid | 15.28 | 19.3 |
| CDX88283 | Canola | nucleus | 15.0 | 19.29 |
| TraesCS6A01G278300.3 | Wheat | plastid | 15.56 | 19.18 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 14.44 | 18.98 |
| CDX73451 | Canola | cytosol | 13.06 | 18.8 |
| CDY41556 | Canola | nucleus | 15.0 | 18.62 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 14.17 | 18.55 |
| CDX88432 | Canola | nucleus | 14.44 | 18.31 |
| CDX87460 | Canola | nucleus | 14.44 | 18.25 |
| CDY64698 | Canola | nucleus | 13.06 | 18.01 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 13.89 | 17.92 |
| EER90058 | Sorghum | plastid | 14.17 | 17.83 |
| CDX78261 | Canola | nucleus | 12.78 | 17.76 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 13.89 | 17.67 |
| CDY46642 | Canola | nucleus | 14.17 | 17.65 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 13.89 | 17.54 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 13.89 | 17.42 |
| Zm00001d017829_P002 | Maize | plastid | 16.67 | 17.39 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 14.17 | 17.35 |
| CDY21356 | Canola | nucleus | 13.89 | 17.24 |
| CDX80046 | Canola | nucleus | 15.0 | 17.09 |
| CDY41557 | Canola | nucleus | 15.0 | 17.09 |
| CDX87594 | Canola | nucleus | 15.0 | 16.88 |
| CDX68024 | Canola | nucleus | 13.06 | 16.61 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 15.28 | 16.57 |
| CDY48016 | Canola | nucleus | 15.0 | 16.56 |
| CDX79253 | Canola | nucleus | 12.78 | 16.43 |
| CDY27523 | Canola | nucleus | 14.72 | 16.41 |
| CDY67263 | Canola | nucleus | 14.44 | 15.85 |
| KXG30724 | Sorghum | plastid | 13.61 | 15.81 |
| Zm00001d018103_P002 | Maize | plasma membrane | 13.89 | 15.72 |
| Zm00001d051627_P002 | Maize | plastid | 15.83 | 15.49 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 12.78 | 15.38 |
| TraesCS6D01G297300.1 | Wheat | plastid | 13.33 | 15.38 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 12.78 | 15.28 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 12.78 | 15.13 |
| TraesCS6B01G348100.1 | Wheat | plastid | 13.06 | 15.11 |
| CDY00446 | Canola | nucleus | 14.17 | 15.0 |
| HORVU6Hr1G078060.1 | Barley | plastid | 13.06 | 14.87 |
| Zm00001d046716_P001 | Maize | nucleus | 14.72 | 14.72 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 12.22 | 14.67 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 13.61 | 14.16 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 16.11 | 13.98 |
| CDY50131 | Canola | nucleus | 14.72 | 13.87 |
| Os06t0220600-01 | Rice | plastid | 13.06 | 13.7 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 13.61 | 13.5 |
| CDX76015 | Canola | nucleus | 11.39 | 13.44 |
| CDX77783 | Canola | nucleus | 15.83 | 13.41 |
| CDY12068 | Canola | nucleus | 13.33 | 13.41 |
| CDY13782 | Canola | nucleus | 11.39 | 13.36 |
| Zm00001d037209_P001 | Maize | plastid | 12.22 | 13.25 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 13.33 | 13.19 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 15.0 | 13.14 |
| OQU76075 | Sorghum | plastid | 12.78 | 13.03 |
| CDX76950 | Canola | nucleus | 11.11 | 12.99 |
| CDX90262 | Canola | nucleus | 13.61 | 12.83 |
| CDY26229 | Canola | nucleus | 13.06 | 12.67 |
| CDY41059 | Canola | nucleus | 15.0 | 12.65 |
| CDY48318 | Canola | nucleus | 13.06 | 12.63 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 12.5 | 12.4 |
| CDY06947 | Canola | nucleus | 14.72 | 12.33 |
| CDY23739 | Canola | nucleus | 13.06 | 12.27 |
| CDX75170 | Canola | extracellular | 5.56 | 12.27 |
| CDY17173 | Canola | nucleus | 12.78 | 12.2 |
| CDY28918 | Canola | mitochondrion | 16.39 | 12.19 |
| CDY42724 | Canola | cytosol | 12.78 | 12.14 |
| CDY67299 | Canola | nucleus | 12.78 | 12.07 |
| CDY69852 | Canola | cytosol | 12.78 | 12.04 |
| CDY27186 | Canola | nucleus | 15.0 | 12.03 |
| CDX84689 | Canola | nucleus | 13.61 | 12.01 |
| CDY57580 | Canola | nucleus | 14.72 | 11.96 |
| CDX72106 | Canola | nucleus | 15.0 | 11.87 |
| CDX79527 | Canola | nucleus | 13.33 | 11.82 |
| CDY26001 | Canola | nucleus | 13.33 | 11.79 |
| CDY37724 | Canola | nucleus | 10.56 | 11.76 |
| CDY24106 | Canola | nucleus | 13.33 | 11.62 |
| CDY25867 | Canola | nucleus | 13.06 | 11.6 |
| CDY55846 | Canola | nucleus | 12.78 | 11.47 |
| CDY07975 | Canola | nucleus | 14.72 | 11.25 |
| CDX74030 | Canola | nucleus | 14.72 | 11.23 |
| CDY66272 | Canola | nucleus | 15.0 | 11.04 |
| CDY15850 | Canola | nucleus | 11.11 | 10.81 |
| CDY35966 | Canola | nucleus | 14.72 | 10.73 |
| CDY22136 | Canola | nucleus | 14.44 | 10.7 |
| CDY36753 | Canola | nucleus | 12.78 | 10.57 |
| CDY25957 | Canola | nucleus | 15.83 | 10.31 |
| CDY24201 | Canola | nucleus | 10.28 | 10.22 |
| CDY43360 | Canola | nucleus | 10.28 | 10.22 |
| CDY11989 | Canola | nucleus | 12.22 | 10.19 |
| CDY47382 | Canola | golgi, plastid | 11.67 | 10.1 |
| CDX69279 | Canola | nucleus | 6.39 | 9.75 |
| CDY13339 | Canola | mitochondrion | 4.44 | 9.52 |
| CDX94301 | Canola | nucleus | 11.67 | 9.5 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 12.78 | 9.45 |
| CDY46690 | Canola | nucleus | 11.11 | 9.35 |
| CDX92807 | Canola | nucleus | 11.39 | 9.11 |
| CDX89316 | Canola | endoplasmic reticulum | 11.11 | 8.95 |
| CDY46689 | Canola | nucleus | 11.39 | 8.86 |
| CDY40554 | Canola | nucleus | 16.11 | 8.84 |
| CDY36357 | Canola | nucleus | 11.39 | 7.56 |
| CDY42577 | Canola | nucleus | 11.39 | 7.52 |
| CDX69277 | Canola | mitochondrion | 3.33 | 6.45 |
| CDY21399 | Canola | mitochondrion | 1.94 | 4.83 |
Protein Annotations
| EnsemblPlants:CDX74070 | EnsemblPlantsGene:GSBRNA2T00111818001 | Gene3D:3.30.70.330 | GO:A0A078CBC1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44374 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX74070 | ProteinID:CDX74070.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDB782 | MapMan:35.1 | : | : |
Description
BnaA03g29770D
Coordinates
chrLK031800:+:1174480..1176344
Molecular Weight (calculated)
40369.3 Da
IEP (calculated)
3.873
GRAVY (calculated)
-1.033
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQPNQKNNN FKDTKIFVGG LTWRTTTDDL KNFFQVRFGE VIDANVVSEG LPGGKLRSKG YGFVVFRNAE SANTACQLPG PVIDGRQTNV NMAYIGAKNN
101: TNLSNQNGLF NQAASHQYQI ASHNPNQHFP QPYWAPYYGH RPYMYNVPCY SYPTAMMHQY VLAYRMHRNW ERLNNQPSVK VSAPPNAPIV ENNEDEADTE
201: TDNNDINQDV NDQELGINEE DADTEADSDQ EGEISAGEDN DIEQDVNDQE LEINEEDADA DTEAESDEGE ISAGEDNDIS QAVNDQELEI MNGQEDGTKQ
301: EVDVTKQLGN GVEVTLQCEI VCEEEAENTP QENGNGHEEN GEQEEGEKQE YIKERVREAI
101: TNLSNQNGLF NQAASHQYQI ASHNPNQHFP QPYWAPYYGH RPYMYNVPCY SYPTAMMHQY VLAYRMHRNW ERLNNQPSVK VSAPPNAPIV ENNEDEADTE
201: TDNNDINQDV NDQELGINEE DADTEADSDQ EGEISAGEDN DIEQDVNDQE LEINEEDADA DTEAESDEGE ISAGEDNDIS QAVNDQELEI MNGQEDGTKQ
301: EVDVTKQLGN GVEVTLQCEI VCEEEAENTP QENGNGHEEN GEQEEGEKQE YIKERVREAI
001: MSQTNNHDTR VTKIFVGNLT WRTTADDLRR YFEQFGQVVD ANVVSETYPG RSKGYGFITF RDYVSTVRAL QNSKPIIDGR TTNCNLASAG AKQNMNHPNL
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP
Arabidopsis Description
RNA recognition motif-containing protein [Source:UniProtKB/TrEMBL;Acc:Q1PES4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.