Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88283 | Canola | nucleus | 84.69 | 96.79 |
| AT1G76460.1 | Thale cress | nucleus | 80.0 | 89.82 |
| Bra015741.1-P | Field mustard | nucleus, plastid, vacuole | 80.31 | 82.37 |
| CDY33653 | Canola | nucleus | 62.5 | 79.05 |
| CDY31508 | Canola | nucleus | 61.56 | 78.8 |
| CDY29496 | Canola | nucleus | 64.06 | 78.54 |
| CDY31859 | Canola | nucleus | 57.81 | 76.76 |
| CDY01349 | Canola | nucleus | 57.81 | 76.76 |
| CDX96615 | Canola | nucleus | 60.31 | 76.59 |
| KRH51553 | Soybean | nucleus, plastid | 61.25 | 68.53 |
| KRH60871 | Soybean | nucleus, plastid | 60.62 | 67.83 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 59.69 | 67.02 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 45.31 | 51.42 |
| Solyc02g082270.2.1 | Tomato | nucleus | 45.0 | 51.06 |
| CDY51790 | Canola | cytosol | 15.62 | 46.73 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 16.25 | 46.43 |
| CDX73279 | Canola | cytosol | 32.81 | 43.39 |
| CDY69197 | Canola | nucleus | 30.0 | 42.67 |
| CDY04769 | Canola | nucleus | 30.94 | 41.77 |
| CDY02889 | Canola | nucleus | 26.56 | 39.17 |
| CDY25759 | Canola | nucleus | 30.31 | 38.96 |
| CDX73451 | Canola | cytosol | 30.0 | 38.4 |
| CDY41556 | Canola | nucleus | 33.75 | 37.24 |
| CDX87460 | Canola | nucleus | 33.12 | 37.19 |
| CDY64698 | Canola | nucleus | 30.31 | 37.16 |
| CDX88432 | Canola | nucleus | 32.81 | 36.97 |
| CDY21356 | Canola | nucleus | 33.44 | 36.9 |
| CDX68024 | Canola | nucleus | 32.19 | 36.4 |
| CDY46642 | Canola | nucleus | 32.81 | 36.33 |
| CDX78261 | Canola | nucleus | 29.06 | 35.91 |
| CDX79253 | Canola | nucleus | 30.94 | 35.36 |
| CDY41557 | Canola | nucleus | 34.38 | 34.81 |
| CDX80046 | Canola | nucleus | 34.06 | 34.49 |
| CDY48016 | Canola | nucleus | 33.75 | 33.13 |
| CDY27523 | Canola | nucleus | 33.12 | 32.82 |
| CDY67263 | Canola | nucleus | 32.5 | 31.71 |
| CDY00446 | Canola | nucleus | 32.5 | 30.59 |
| CDY13339 | Canola | mitochondrion | 12.81 | 24.4 |
| CDY21399 | Canola | mitochondrion | 10.0 | 22.07 |
| CDY05301 | Canola | nucleus | 18.75 | 17.09 |
| CDY24657 | Canola | nucleus | 18.12 | 17.06 |
| CDY26001 | Canola | nucleus | 21.25 | 16.71 |
| CDY55846 | Canola | nucleus | 20.62 | 16.46 |
| CDY13782 | Canola | nucleus | 15.62 | 16.29 |
| CDY24106 | Canola | nucleus | 20.94 | 16.22 |
| CDY25867 | Canola | nucleus | 20.31 | 16.05 |
| CDY12068 | Canola | nucleus | 17.81 | 15.92 |
| CDX76950 | Canola | nucleus | 15.31 | 15.91 |
| CDX90262 | Canola | nucleus | 18.44 | 15.45 |
| CDY26229 | Canola | nucleus | 17.81 | 15.36 |
| CDY48318 | Canola | nucleus | 17.81 | 15.32 |
| CDX74070 | Canola | cytosol | 16.88 | 15.0 |
| CDY08023 | Canola | nucleus | 16.88 | 15.0 |
| CDY37724 | Canola | nucleus | 15.0 | 14.86 |
| CDY67299 | Canola | nucleus | 17.19 | 14.44 |
| CDY17173 | Canola | nucleus | 16.56 | 14.06 |
| CDY23739 | Canola | nucleus | 16.56 | 13.84 |
| CDX84689 | Canola | nucleus | 17.5 | 13.73 |
| CDY06947 | Canola | nucleus | 18.44 | 13.72 |
| CDX79527 | Canola | nucleus | 17.19 | 13.55 |
| CDY57580 | Canola | nucleus | 18.44 | 13.32 |
| CDY43360 | Canola | nucleus | 15.0 | 13.26 |
| CDY24201 | Canola | nucleus | 15.0 | 13.26 |
| CDX77783 | Canola | nucleus | 17.5 | 13.18 |
| CDX76015 | Canola | nucleus | 12.5 | 13.11 |
| CDY41059 | Canola | nucleus | 17.5 | 13.11 |
| CDY42724 | Canola | cytosol | 15.31 | 12.93 |
| CDY69852 | Canola | cytosol | 15.31 | 12.83 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 13.75 | 12.72 |
| CDY27186 | Canola | nucleus | 17.81 | 12.69 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 14.38 | 12.67 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 14.38 | 12.64 |
| CDY50131 | Canola | nucleus | 15.0 | 12.57 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 16.25 | 12.53 |
| CDX72106 | Canola | nucleus | 17.81 | 12.53 |
| CDX75170 | Canola | extracellular | 6.25 | 12.27 |
| CDY15850 | Canola | nucleus | 13.75 | 11.89 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 15.0 | 11.68 |
| CDY07975 | Canola | nucleus | 17.19 | 11.68 |
| CDX74030 | Canola | nucleus | 17.19 | 11.65 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 13.12 | 11.57 |
| CDY28918 | Canola | mitochondrion | 17.19 | 11.36 |
| CDY22136 | Canola | nucleus | 17.19 | 11.32 |
| CDY66272 | Canola | nucleus | 16.88 | 11.04 |
| CDY35966 | Canola | nucleus | 16.88 | 10.93 |
| CDY36357 | Canola | nucleus | 17.81 | 10.52 |
| CDY46690 | Canola | nucleus | 14.06 | 10.51 |
| CDY42577 | Canola | nucleus | 17.81 | 10.46 |
| CDY11989 | Canola | nucleus | 14.06 | 10.42 |
| CDY36753 | Canola | nucleus | 14.06 | 10.34 |
| CDY25957 | Canola | nucleus | 17.81 | 10.31 |
| CDX94301 | Canola | nucleus | 14.06 | 10.18 |
| CDX69279 | Canola | nucleus | 7.5 | 10.17 |
| CDX89316 | Canola | endoplasmic reticulum | 14.06 | 10.07 |
| CDX92807 | Canola | nucleus | 14.06 | 10.0 |
| CDY46689 | Canola | nucleus | 14.38 | 9.94 |
| CDY47382 | Canola | golgi, plastid | 12.81 | 9.86 |
| CDY40554 | Canola | nucleus | 17.19 | 8.38 |
| CDX69277 | Canola | mitochondrion | 4.06 | 6.99 |
Protein Annotations
| EnsemblPlants:CDX87594 | EnsemblPlantsGene:GSBRNA2T00146599001 | Gene3D:3.30.70.330 | GO:A0A078DGS4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX87594 | ProteinID:CDX87594.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDFD52 | MapMan:35.1 | : |
Description
BnaA07g32790D
Coordinates
chrLK031850:+:1385292..1387499
Molecular Weight (calculated)
34922.6 Da
IEP (calculated)
9.756
GRAVY (calculated)
-0.362
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSEAL RRHFEQFGDI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPVID GRRANCNLAS
101: LGRPRPPLPY ALIPNMPGRL RPASPYIGNV QGPRGPPFGN YPYQQPLPYN YQQGVVYPYG VAAYGPEYMY SQSQGLYGPY MGQQYLQVYG VPGAVNTPVY
201: QYGQFNQTVP GGQGYTAVQG YSVPGSHVLQ LGGPTVSAMT TSSMPALQAP YPPGPAPAQS HIIVHPPQFM QSSSSDQTTR LYKIVLLSLE GKKKKSGSLR
301: VSGFEFAGTI MVFLRRGNRW
101: LGRPRPPLPY ALIPNMPGRL RPASPYIGNV QGPRGPPFGN YPYQQPLPYN YQQGVVYPYG VAAYGPEYMY SQSQGLYGPY MGQQYLQVYG VPGAVNTPVY
201: QYGQFNQTVP GGQGYTAVQG YSVPGSHVLQ LGGPTVSAMT TSSMPALQAP YPPGPAPAQS HIIVHPPQFM QSSSSDQTTR LYKIVLLSLE GKKKKSGSLR
301: VSGFEFAGTI MVFLRRGNRW
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.