Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 4
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_04s0043g01000.t01 | |
| VIT_17s0000g06570.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20880.1 | VIT_04s0043g01000.t01 | AT3G14100.1 | 21798944 |
| AT1G20880.1 | VIT_17s0000g06570.t01 | AT5G61380.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51553 | Soybean | nucleus, plastid | 80.35 | 80.07 |
| KRH60871 | Soybean | nucleus, plastid | 80.0 | 79.72 |
| Bra025852.1-P | Field mustard | nucleus | 63.51 | 69.35 |
| CDY31859 | Canola | nucleus | 58.6 | 69.29 |
| CDY31508 | Canola | nucleus | 60.7 | 69.2 |
| CDY33653 | Canola | nucleus | 61.4 | 69.17 |
| CDY29496 | Canola | nucleus | 62.81 | 68.58 |
| CDY01349 | Canola | nucleus | 57.19 | 67.63 |
| AT1G76460.1 | Thale cress | nucleus | 67.37 | 67.37 |
| CDX88283 | Canola | nucleus | 65.96 | 67.14 |
| Bra016445.1-P | Field mustard | nucleus | 60.7 | 67.05 |
| Bra012254.1-P | Field mustard | nucleus | 56.49 | 66.81 |
| CDX96615 | Canola | nucleus | 58.95 | 66.67 |
| AT1G20880.1 | Thale cress | nucleus | 63.16 | 65.69 |
| CDX87594 | Canola | nucleus | 67.02 | 59.69 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 55.09 | 55.67 |
| Solyc02g082270.2.1 | Tomato | nucleus | 54.74 | 55.32 |
| Bra015741.1-P | Field mustard | nucleus, plastid, vacuole | 56.49 | 51.6 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 44.56 | 46.01 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 42.81 | 45.35 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 41.05 | 43.82 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 32.63 | 37.65 |
| VIT_16s0098g01050.t01 | Wine grape | endoplasmic reticulum, extracellular | 29.12 | 28.52 |
| VIT_08s0007g06300.t01 | Wine grape | nucleus | 22.81 | 19.01 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 15.79 | 17.44 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 21.05 | 17.0 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 25.61 | 16.26 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 19.3 | 15.8 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 19.65 | 15.6 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 25.26 | 15.52 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 20.0 | 15.16 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 22.46 | 14.75 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 19.65 | 14.29 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 23.16 | 13.81 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 17.19 | 13.65 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 21.75 | 13.39 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 22.11 | 13.18 |
| VIT_06s0009g01190.t01 | Wine grape | nucleus | 20.7 | 12.91 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 21.75 | 11.97 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 15.44 | 9.34 |
Protein Annotations
| EntrezGene:100258188 | wikigene:100258188 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:CCB62678 | ProteinID:CCB62678.1 |
| UniProt:F6I6W0 | EMBL:FN596759 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100258188 | wikigene:LOC100258188 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000210ABA7 | ArrayExpress:VIT_18s0122g00660 | EnsemblPlantsGene:VIT_18s0122g00660 | EnsemblPlants:VIT_18s0122g00660.t01 | unigene:Vvi.12259 |
| RefSeq:XP_002273353 | RefSeq:XP_002273353.2 | RefSeq:XP_010664012.1 | RefSeq:XP_010664014.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr18:+:524899..531374
Molecular Weight (calculated)
30849.1 Da
IEP (calculated)
8.763
GRAVY (calculated)
-0.374
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQPIPGPS SGSSSSSGFQ FLNSPFGDTT YTKVFVGGLA WETQSETMRR YFEQFGEILE AVVITDKNTG RSKGYGFVTF RDPESARRAC LDPAPIIDGR
101: RANCNLASLG RPRPSMSYGR LRPVTPYLGS VPATRGSYVG NFGYQQPVSY SYQQGFMYPS YGYAAYGPEY VYPQGVYNPY PGQQYLQIYG VPGTVNTAIY
201: PYGQLGQTLP SSHGYTTVQG YAMPGHQFMQ FGGSSVNAIS TSPIPTIQAP YPTGIAAPVP AQPQFIVPAH SPQFIQGSGP DQTTG
101: RANCNLASLG RPRPSMSYGR LRPVTPYLGS VPATRGSYVG NFGYQQPVSY SYQQGFMYPS YGYAAYGPEY VYPQGVYNPY PGQQYLQIYG VPGTVNTAIY
201: PYGQLGQTLP SSHGYTTVQG YAMPGHQFMQ FGGSSVNAIS TSPIPTIQAP YPTGIAAPVP AQPQFIVPAH SPQFIQGSGP DQTTG
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.