Factsheet for VIT_06s0009g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072501	Potato	nucleus	40.04	44.42
Solyc10g081330.1.1	Tomato	nucleus	39.39	43.17
VIT_08s0056g00690.t01	Wine grape	nucleus	42.01	41.47
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	39.82	35.14
VIT_07s0031g01290.t01	Wine grape	nucleus	29.1	33.93
VIT_08s0007g06300.t01	Wine grape	nucleus	21.88	29.24
VIT_19s0014g01570.t01	Wine grape	nucleus	28.23	28.73
VIT_18s0089g00920.t01	Wine grape	nucleus	12.69	21.56
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	12.91	20.7
VIT_13s0019g03610.t01	Wine grape	nucleus	10.94	20.24
VIT_15s0048g02630.t01	Wine grape	nucleus	11.82	20.22
VIT_18s0001g05840.t01	Wine grape	nucleus	11.82	19.57
VIT_12s0057g01280.t01	Wine grape	nucleus	10.28	18.22
VIT_09s0002g02350.t01	Wine grape	cytosol	13.57	17.56
VIT_14s0066g00480.t01	Wine grape	nucleus	14.44	17.55
VIT_19s0015g00920.t01	Wine grape	nucleus	12.91	16.95
VIT_07s0031g00600.t01	Wine grape	cytosol	12.91	16.43
VIT_18s0117g00150.t01	Wine grape	nucleus	12.91	16.43
VIT_19s0090g01660.t01	Wine grape	nucleus	16.85	16.11
VIT_12s0057g00480.t01	Wine grape	nucleus	16.63	15.9
VIT_07s0005g03980.t01	Wine grape	nucleus	14.44	15.21
VIT_05s0049g01660.t01	Wine grape	nucleus	14.88	14.66
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	8.1	12.71
VIT_18s0001g08640.t01	Wine grape	nucleus	12.25	11.89

Protein Annotations

EntrezGene:100263294	wikigene:100263294	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CCB49171	ProteinID:CCB49171.1
ncoils:Coil	UniProt:F6HA67	EMBL:FN595504	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100263294	wikigene:LOC100263294	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44578	PANTHER:PTHR44578:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	TIGR:TC56069	UniParc:UPI0001983955	ArrayExpress:VIT_06s0009g01190	EnsemblPlantsGene:VIT_06s0009g01190
EnsemblPlants:VIT_06s0009g01190.t01	unigene:Vvi.12852	RefSeq:XP_002276040	RefSeq:XP_002276040.1	RefSeq:XP_019076290.1	SEG:seg

Description

No Description!

Coordinates

chr6:+:12801724..12803398

Molecular Weight (calculated)

48590.2 Da

IEP (calculated)

4.422

GRAVY (calculated)

-0.625

Length

457 amino acids

Sequence
(BLAST)

001: MAKKRKSQEQ LQPKQEEEEE SEEEDSSEEE EEEEEEEEED DDDDDGEEED SSEEENSSEE EEDSSEDADE ADNEDDSEAS KRETIRKLLQ PFGKDQIIAL
101: LKEAADSNPA TLSKILPAVE SDPVHRKIFV HGLGWDATNE TLTSAFKQYG QIEECNVVTD KITGRSKGYG FVLFKTRSGA RKALKQPQKK IGNRMAACHL
201: AAAGPSGSNP AAGADVNERR LYVGNVGPQI SAEKLRTFFA KFGEIEDGPL GFDKATGKFR GFAIIVFKTA EGMKRALEEP IKTFESCKLQ CSRKVAKTTP
301: VQQQAVAGST GATLPPSNYQ LQAYQMGLNQ GLIGQNVNPQ GVLVGHNQAV GILNPVLGAA AALNQPGLSQ GFAGGLSQPV NRAPPVGLSA GFGPQLGMNS
401: INPGVLGAYG SPAAFQGLGA YQSSQLGQSP ASAAAAGAGR PHPGVGSVGT LPSYFGR

Best Arabidopsis Sequence Match ( AT2G41060.2 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.