Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88283 | Canola | nucleus | 88.42 | 90.0 |
| CDX87594 | Canola | nucleus | 89.82 | 80.0 |
| AT1G20880.1 | Thale cress | nucleus | 75.79 | 78.83 |
| KRH51553 | Soybean | nucleus, plastid | 69.82 | 69.58 |
| KRH60871 | Soybean | nucleus, plastid | 69.12 | 68.88 |
| Bra015741.1-P | Field mustard | nucleus, plastid, vacuole | 74.04 | 67.63 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 67.37 | 67.37 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 50.88 | 51.42 |
| Solyc02g082270.2.1 | Tomato | nucleus | 50.53 | 51.06 |
| AT5G53720.1 | Thale cress | cytosol | 17.89 | 51.0 |
| AT1G33470.1 | Thale cress | cytosol | 35.44 | 41.22 |
| AT1G78260.1 | Thale cress | nucleus | 37.89 | 37.63 |
| AT1G22330.1 | Thale cress | nucleus | 37.54 | 36.77 |
| AT3G54770.1 | Thale cress | nucleus | 33.33 | 36.4 |
| AT5G53680.1 | Thale cress | cytosol | 20.35 | 34.32 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 20.35 | 33.14 |
| AT2G46780.1 | Thale cress | nucleus | 36.84 | 31.25 |
| AT1G22910.3 | Thale cress | nucleus | 37.19 | 30.55 |
| AT3G06970.1 | Thale cress | nucleus | 19.3 | 17.35 |
| AT3G15010.2 | Thale cress | nucleus | 22.81 | 16.09 |
| AT1G17640.1 | Thale cress | nucleus | 20.0 | 15.45 |
| AT4G14300.1 | Thale cress | nucleus | 21.75 | 15.09 |
| AT2G22090.2 | Thale cress | nucleus | 18.25 | 14.99 |
| AT2G33410.1 | Thale cress | nucleus | 21.05 | 14.85 |
| AT3G13224.2 | Thale cress | nucleus | 17.54 | 13.97 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 17.19 | 13.61 |
| AT5G40490.1 | Thale cress | nucleus | 19.65 | 13.24 |
| AT2G41060.3 | Thale cress | nucleus | 20.7 | 13.08 |
| AT3G56860.10 | Thale cress | nucleus | 21.4 | 12.76 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 19.65 | 12.36 |
| AT4G36960.2 | Thale cress | cytosol | 15.79 | 11.87 |
| AT2G22100.1 | Thale cress | nucleus | 15.44 | 11.52 |
| AT3G07810.2 | Thale cress | nucleus | 19.65 | 11.31 |
| AT4G26650.1 | Thale cress | nucleus | 17.54 | 10.99 |
| AT5G55550.10 | Thale cress | nucleus | 16.49 | 9.27 |
| AT2G19380.1 | Thale cress | nucleus | 16.84 | 7.83 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:843979 | UniProt:A0A178W847 | ProteinID:AEE35845.1 | ArrayExpress:AT1G76460 |
| EnsemblPlantsGene:AT1G76460 | RefSeq:AT1G76460 | TAIR:AT1G76460 | RefSeq:AT1G76460-TAIR-G | EnsemblPlants:AT1G76460.1 | TAIR:AT1G76460.1 |
| UniProt:F4I2E4 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
| GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_565132.2 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP14508.1 |
| PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00001632D2 | SEG:seg | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
Coordinates
chr1:-:28686181..28689208
Molecular Weight (calculated)
30921.5 Da
IEP (calculated)
8.496
GRAVY (calculated)
-0.374
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.