Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytoskeleton 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017475.1-P | Field mustard | nucleus | 80.79 | 85.71 |
| CDY41059 | Canola | nucleus | 80.57 | 85.48 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 77.7 | 84.82 |
| Bra024928.1-P | Field mustard | nucleus | 78.59 | 84.76 |
| CDX77783 | Canola | nucleus | 79.25 | 84.47 |
| Bra022145.1-P | Field mustard | nucleus | 81.46 | 80.22 |
| CDY28918 | Canola | mitochondrion | 81.9 | 76.65 |
| CDY50131 | Canola | nucleus | 54.97 | 65.18 |
| CDY25957 | Canola | nucleus | 78.37 | 64.2 |
| Bra021062.1-P | Field mustard | nucleus | 55.19 | 63.78 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 54.97 | 60.58 |
| CDY40554 | Canola | nucleus | 81.46 | 56.25 |
| GSMUA_Achr10P... | Banana | nucleus | 45.03 | 46.36 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 46.8 | 45.79 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 46.58 | 45.57 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 46.58 | 45.57 |
| TraesCSU01G068500.1 | Wheat | nucleus | 46.58 | 45.57 |
| Os07t0584500-01 | Rice | nucleus | 47.46 | 45.55 |
| GSMUA_Achr10P... | Banana | nucleus | 45.92 | 45.22 |
| Os11t0637700-01 | Rice | plasma membrane | 46.14 | 44.75 |
| Zm00001d019079_P001 | Maize | cytosol | 43.93 | 44.42 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 46.14 | 44.37 |
| Zm00001d007772_P001 | Maize | nucleus | 43.71 | 44.1 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 45.7 | 44.04 |
| EER96020 | Sorghum | nucleus | 44.15 | 43.96 |
| EER98147 | Sorghum | nucleus | 43.71 | 43.71 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 42.6 | 43.67 |
| AT3G07810.2 | Thale cress | nucleus | 47.68 | 43.64 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 47.68 | 43.2 |
| EER97452 | Sorghum | nucleus | 44.59 | 42.89 |
| Zm00001d019084_P002 | Maize | nucleus | 41.72 | 41.63 |
| Zm00001d006704_P002 | Maize | nucleus | 44.15 | 41.32 |
| AT4G26650.1 | Thale cress | nucleus | 41.5 | 41.32 |
| CDX75170 | Canola | extracellular | 14.13 | 39.26 |
| TraesCS2A01G190400.1 | Wheat | plastid | 45.92 | 39.17 |
| AT5G55550.10 | Thale cress | nucleus | 42.16 | 37.67 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 44.59 | 37.34 |
| Zm00001d019086_P001 | Maize | nucleus | 43.49 | 37.03 |
| AT2G33410.1 | Thale cress | nucleus | 32.89 | 36.88 |
| OQU83904 | Sorghum | nucleus | 36.2 | 36.44 |
| AT4G14300.1 | Thale cress | nucleus | 30.68 | 33.82 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 24.72 | 31.11 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 46.36 | 30.93 |
| AT3G13224.2 | Thale cress | nucleus | 24.28 | 30.73 |
| AT1G17640.1 | Thale cress | nucleus | 23.84 | 29.27 |
| AT5G40490.1 | Thale cress | nucleus | 27.15 | 29.08 |
| AT5G53720.1 | Thale cress | cytosol | 6.4 | 29.0 |
| AT4G36960.2 | Thale cress | cytosol | 19.65 | 23.48 |
| AT1G20880.1 | Thale cress | nucleus | 11.92 | 19.71 |
| AT1G76460.1 | Thale cress | nucleus | 12.36 | 19.65 |
| AT1G33470.1 | Thale cress | cytosol | 10.6 | 19.59 |
| AT1G78260.1 | Thale cress | nucleus | 12.14 | 19.16 |
| AT5G53680.1 | Thale cress | cytosol | 7.06 | 18.93 |
| AT1G22330.1 | Thale cress | nucleus | 11.92 | 18.56 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 7.06 | 18.29 |
| AT3G15010.2 | Thale cress | nucleus | 15.23 | 17.08 |
| AT3G54770.1 | Thale cress | nucleus | 9.71 | 16.86 |
| AT2G46780.1 | Thale cress | nucleus | 11.92 | 16.07 |
| AT1G22910.3 | Thale cress | nucleus | 11.48 | 14.99 |
| AT2G41060.3 | Thale cress | nucleus | 13.91 | 13.97 |
| AT3G06970.1 | Thale cress | nucleus | 9.71 | 13.88 |
| AT3G56860.10 | Thale cress | nucleus | 14.35 | 13.6 |
| AT2G22090.2 | Thale cress | nucleus | 10.38 | 13.54 |
| AT2G22100.1 | Thale cress | nucleus | 10.82 | 12.83 |
| AT2G19380.1 | Thale cress | nucleus | 9.05 | 6.69 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:834812 | ProteinID:AED95541.1 | ArrayExpress:AT5G47620 | EnsemblPlantsGene:AT5G47620 |
| RefSeq:AT5G47620 | TAIR:AT5G47620 | RefSeq:AT5G47620-TAIR-G | EnsemblPlants:AT5G47620.4 | TAIR:AT5G47620.4 | Unigene:At.22737 |
| InterPro:DAZAP1_RRM2 | UniProt:F4JYK6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001190485.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44291 |
| PANTHER:PTHR44291:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0001E931AB |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
Coordinates
chr5:-:19302190..19304816
Molecular Weight (calculated)
48601.4 Da
IEP (calculated)
8.075
GRAVY (calculated)
-0.282
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKILVDSIV YNQLCRSDKC ISLSEVVEAK
101: KAVPRDDHVV FNKSNSSLQG SPGPSNSKKI FVGGLASSVT EAEFKKYFAQ FGMITDVVVM YDHRTQRPRG FGFISYDSEE AVDKVLQKTF HELNGKMVEV
201: KLAVPKDMAL NTMRNQMNVN SFGTSRISSL LNEYTQGFSP SPISGYGVKP EVRYSPAVGN RGGFSPFGHG YGIELNFEPN QTQNYGSGSS GGFGRPFSPG
301: YAASLGRFGS QMESGGASVG NGSVLNAAPK NHLWGNGGLG YMSNSPISRS SFSGNSGMSS LGSIGDNWGT VARARSSYHG ERGGVGLEAM RGVHVGGYSS
401: GSSILEADSL YSDSMWLSLP AKAEEGLGMG PLDFMSRGPA GYINRQPNGG IAA
101: KAVPRDDHVV FNKSNSSLQG SPGPSNSKKI FVGGLASSVT EAEFKKYFAQ FGMITDVVVM YDHRTQRPRG FGFISYDSEE AVDKVLQKTF HELNGKMVEV
201: KLAVPKDMAL NTMRNQMNVN SFGTSRISSL LNEYTQGFSP SPISGYGVKP EVRYSPAVGN RGGFSPFGHG YGIELNFEPN QTQNYGSGSS GGFGRPFSPG
301: YAASLGRFGS QMESGGASVG NGSVLNAAPK NHLWGNGGLG YMSNSPISRS SFSGNSGMSS LGSIGDNWGT VARARSSYHG ERGGVGLEAM RGVHVGGYSS
401: GSSILEADSL YSDSMWLSLP AKAEEGLGMG PLDFMSRGPA GYINRQPNGG IAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.